Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18406 | 5' | -56.9 | NC_004681.1 | + | 63742 | 0.71 | 0.470116 |
Target: 5'- -cCGCUGAGCCCAC-AUCAgGUUCu- -3' miRNA: 3'- ccGCGGCUCGGGUGcUAGUgCAAGcc -5' |
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18406 | 5' | -56.9 | NC_004681.1 | + | 7014 | 0.67 | 0.715061 |
Target: 5'- gGGUGgaaCGAGCCCACGGUgGUGgccaCGGa -3' miRNA: 3'- -CCGCg--GCUCGGGUGCUAgUGCaa--GCC- -5' |
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18406 | 5' | -56.9 | NC_004681.1 | + | 46845 | 0.67 | 0.72518 |
Target: 5'- aGCGCCGGuCCCAC---CACGUUCa- -3' miRNA: 3'- cCGCGGCUcGGGUGcuaGUGCAAGcc -5' |
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18406 | 5' | -56.9 | NC_004681.1 | + | 40240 | 0.66 | 0.783802 |
Target: 5'- cGGCGUCGcGGCCUGCcuGUCcCGggCGGu -3' miRNA: 3'- -CCGCGGC-UCGGGUGc-UAGuGCaaGCC- -5' |
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18406 | 5' | -56.9 | NC_004681.1 | + | 32097 | 0.7 | 0.53817 |
Target: 5'- cGGCGCCGAucagcgagccgauGCUgGCGAugaUCugGUUCa- -3' miRNA: 3'- -CCGCGGCU-------------CGGgUGCU---AGugCAAGcc -5' |
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18406 | 5' | -56.9 | NC_004681.1 | + | 33494 | 0.69 | 0.600949 |
Target: 5'- uGGCGCCGAugcgguucagguGCCaCACGG-CGCGcgCGa -3' miRNA: 3'- -CCGCGGCU------------CGG-GUGCUaGUGCaaGCc -5' |
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18406 | 5' | -56.9 | NC_004681.1 | + | 32139 | 0.68 | 0.621806 |
Target: 5'- uGCGCUGcuuGCCCAgGAUCACac-CGGc -3' miRNA: 3'- cCGCGGCu--CGGGUgCUAGUGcaaGCC- -5' |
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18406 | 5' | -56.9 | NC_004681.1 | + | 9257 | 0.68 | 0.621806 |
Target: 5'- aGGCGUCGAagacGUucuCCGCGAUCuccGCGgcggUCGGg -3' miRNA: 3'- -CCGCGGCU----CG---GGUGCUAG---UGCa---AGCC- -5' |
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18406 | 5' | -56.9 | NC_004681.1 | + | 62100 | 0.73 | 0.388519 |
Target: 5'- cGCGUCGAGUaggCCGCGAUCugGU-CGa -3' miRNA: 3'- cCGCGGCUCG---GGUGCUAGugCAaGCc -5' |
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18406 | 5' | -56.9 | NC_004681.1 | + | 45044 | 0.67 | 0.715061 |
Target: 5'- aGC-CCGAGCUCGCGGUggcggcuccacCGCGUggGGg -3' miRNA: 3'- cCGcGGCUCGGGUGCUA-----------GUGCAagCC- -5' |
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18406 | 5' | -56.9 | NC_004681.1 | + | 24187 | 0.68 | 0.673942 |
Target: 5'- uGGCGCCGgaaccuugcuGGCCCACGGcgccaccgacaaUgGCGUccaGGa -3' miRNA: 3'- -CCGCGGC----------UCGGGUGCU------------AgUGCAag-CC- -5' |
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18406 | 5' | -56.9 | NC_004681.1 | + | 37820 | 0.68 | 0.66355 |
Target: 5'- uGCGCacacaggaGAG-CgACGAUCACGUUCGu -3' miRNA: 3'- cCGCGg-------CUCgGgUGCUAGUGCAAGCc -5' |
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18406 | 5' | -56.9 | NC_004681.1 | + | 23633 | 0.71 | 0.470116 |
Target: 5'- uGGUGCCGGGggcaaUCACGAUgACGUccugCGGg -3' miRNA: 3'- -CCGCGGCUCg----GGUGCUAgUGCAa---GCC- -5' |
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18406 | 5' | -56.9 | NC_004681.1 | + | 50317 | 0.67 | 0.69461 |
Target: 5'- gGGCGCCauugGAGCUgGCGAcCACcUUgGGg -3' miRNA: 3'- -CCGCGG----CUCGGgUGCUaGUGcAAgCC- -5' |
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18406 | 5' | -56.9 | NC_004681.1 | + | 18195 | 0.71 | 0.473947 |
Target: 5'- gGGCGCCGAuGCCgGgGAUgccgaugcccauaccCGCGggCGGg -3' miRNA: 3'- -CCGCGGCU-CGGgUgCUA---------------GUGCaaGCC- -5' |
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18406 | 5' | -56.9 | NC_004681.1 | + | 54698 | 0.68 | 0.632251 |
Target: 5'- gGGUGCCGucgauGUCCACGAUgAUug-CGGg -3' miRNA: 3'- -CCGCGGCu----CGGGUGCUAgUGcaaGCC- -5' |
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18406 | 5' | -56.9 | NC_004681.1 | + | 72758 | 0.67 | 0.715061 |
Target: 5'- aGGCuCCGGGaa-ACGGUUACgGUUCGGg -3' miRNA: 3'- -CCGcGGCUCgggUGCUAGUG-CAAGCC- -5' |
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18406 | 5' | -56.9 | NC_004681.1 | + | 40054 | 0.67 | 0.715061 |
Target: 5'- cGGCGCCGAcGCgCGCgGAUCGacuuguCGUUgaggCGGg -3' miRNA: 3'- -CCGCGGCU-CGgGUG-CUAGU------GCAA----GCC- -5' |
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18406 | 5' | -56.9 | NC_004681.1 | + | 28441 | 0.7 | 0.509088 |
Target: 5'- cGGCGCCGGGgUgACGAggaCAuCGUUCGu -3' miRNA: 3'- -CCGCGGCUCgGgUGCUa--GU-GCAAGCc -5' |
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18406 | 5' | -56.9 | NC_004681.1 | + | 4928 | 0.68 | 0.620761 |
Target: 5'- cGGCGUCGAuGCgCUugGcagccauGUCGCGgUCGGg -3' miRNA: 3'- -CCGCGGCU-CG-GGugC-------UAGUGCaAGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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