miRNA display CGI


Results 21 - 40 of 48 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18406 5' -56.9 NC_004681.1 + 62100 0.73 0.388519
Target:  5'- cGCGUCGAGUaggCCGCGAUCugGU-CGa -3'
miRNA:   3'- cCGCGGCUCG---GGUGCUAGugCAaGCc -5'
18406 5' -56.9 NC_004681.1 + 53628 0.66 0.752059
Target:  5'- cGCGCUGGccguugagcuugacGCCCGCGAugUCACcg-CGGu -3'
miRNA:   3'- cCGCGGCU--------------CGGGUGCU--AGUGcaaGCC- -5'
18406 5' -56.9 NC_004681.1 + 51594 0.66 0.764726
Target:  5'- cGGUguaGCCGAGCUggcggcaGCGGUCGCccaGUUCGa -3'
miRNA:   3'- -CCG---CGGCUCGGg------UGCUAGUG---CAAGCc -5'
18406 5' -56.9 NC_004681.1 + 45044 0.67 0.715061
Target:  5'- aGC-CCGAGCUCGCGGUggcggcuccacCGCGUggGGg -3'
miRNA:   3'- cCGcGGCUCGGGUGCUA-----------GUGCAagCC- -5'
18406 5' -56.9 NC_004681.1 + 44262 0.66 0.764726
Target:  5'- gGGCGCCGuAGCacuCGuauUCGCGgcCGGu -3'
miRNA:   3'- -CCGCGGC-UCGgguGCu--AGUGCaaGCC- -5'
18406 5' -56.9 NC_004681.1 + 40240 0.66 0.783802
Target:  5'- cGGCGUCGcGGCCUGCcuGUCcCGggCGGu -3'
miRNA:   3'- -CCGCGGC-UCGGGUGc-UAGuGCaaGCC- -5'
18406 5' -56.9 NC_004681.1 + 51507 0.66 0.745159
Target:  5'- uGGCGuuGAGCgCGgaGggCACGUUCu- -3'
miRNA:   3'- -CCGCggCUCGgGUg-CuaGUGCAAGcc -5'
18406 5' -56.9 NC_004681.1 + 75641 0.66 0.783802
Target:  5'- uGGCGCaaaGGGCUCuacCGuGUCGuggauCGUUCGGg -3'
miRNA:   3'- -CCGCGg--CUCGGGu--GC-UAGU-----GCAAGCC- -5'
18406 5' -56.9 NC_004681.1 + 6450 0.66 0.778135
Target:  5'- uGGCGCCcaaGGGCUgcagCGCGGaguUCGCGUacaacucgucggccuUCGGg -3'
miRNA:   3'- -CCGCGG---CUCGG----GUGCU---AGUGCA---------------AGCC- -5'
18406 5' -56.9 NC_004681.1 + 21351 0.66 0.783802
Target:  5'- cGGCGUcaCGGGUCCuacCGG-CACGUUCa- -3'
miRNA:   3'- -CCGCG--GCUCGGGu--GCUaGUGCAAGcc -5'
18406 5' -56.9 NC_004681.1 + 66955 0.73 0.347385
Target:  5'- cGCGCCGAGCUCgaagGCGAcaucggggacagUCACGU-CGGc -3'
miRNA:   3'- cCGCGGCUCGGG----UGCU------------AGUGCAaGCC- -5'
18406 5' -56.9 NC_004681.1 + 30270 0.66 0.77433
Target:  5'- cGGCGUCGAGaCCAcCGAUC-CGU--GGu -3'
miRNA:   3'- -CCGCGGCUCgGGU-GCUAGuGCAagCC- -5'
18406 5' -56.9 NC_004681.1 + 3409 0.73 0.383417
Target:  5'- cGGCGCCcgcgcGAGCCaCGCGcgCACGgacuaacacaaucacUUCGGu -3'
miRNA:   3'- -CCGCGG-----CUCGG-GUGCuaGUGC---------------AAGCC- -5'
18406 5' -56.9 NC_004681.1 + 31246 0.71 0.489421
Target:  5'- cGGCGCCGAGUguuuggCUACGGcaACG-UCGGa -3'
miRNA:   3'- -CCGCGGCUCG------GGUGCUagUGCaAGCC- -5'
18406 5' -56.9 NC_004681.1 + 32882 0.67 0.703844
Target:  5'- gGGCGCCGAGgugguguCCCGgGuccucuuggaaAUCcUGUUCGGg -3'
miRNA:   3'- -CCGCGGCUC-------GGGUgC-----------UAGuGCAAGCC- -5'
18406 5' -56.9 NC_004681.1 + 28042 0.69 0.580187
Target:  5'- cGGCGCUGGcGCUgGCGGUCgagGCGguggCGGc -3'
miRNA:   3'- -CCGCGGCU-CGGgUGCUAG---UGCaa--GCC- -5'
18406 5' -56.9 NC_004681.1 + 17616 0.66 0.745159
Target:  5'- gGGCGCgGAcgacCCCGCGuUCACG-UCGc -3'
miRNA:   3'- -CCGCGgCUc---GGGUGCuAGUGCaAGCc -5'
18406 5' -56.9 NC_004681.1 + 42242 0.67 0.72518
Target:  5'- cGGcCGCCGAgcugcuggucccGCCCGCGGaaggcgccuUCACGgccUGGa -3'
miRNA:   3'- -CC-GCGGCU------------CGGGUGCU---------AGUGCaa-GCC- -5'
18406 5' -56.9 NC_004681.1 + 18743 0.67 0.685332
Target:  5'- cGGCGgCGAGgCCGCGcgugacaccgcacgCACGUUCa- -3'
miRNA:   3'- -CCGCgGCUCgGGUGCua------------GUGCAAGcc -5'
18406 5' -56.9 NC_004681.1 + 60389 0.67 0.69461
Target:  5'- uGGCGgCGAauGUCCugGAgCACGguaCGGg -3'
miRNA:   3'- -CCGCgGCU--CGGGugCUaGUGCaa-GCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.