miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18407 5' -54.4 NC_004681.1 + 52125 0.67 0.808192
Target:  5'- aCCAcCUUGGGCuuGCGcACC--CGGCAGCg -3'
miRNA:   3'- -GGUaGAGUCCG--CGC-UGGuaGCUGUCG- -5'
18407 5' -54.4 NC_004681.1 + 41892 0.67 0.808192
Target:  5'- gCGUCUUccacugcGGCGCGaagGCCGUCGAaccuggaGGCg -3'
miRNA:   3'- gGUAGAGu------CCGCGC---UGGUAGCUg------UCG- -5'
18407 5' -54.4 NC_004681.1 + 54134 0.67 0.808192
Target:  5'- --cUCUCGGGCGCGcggcggACCcUCGuggaagcCAGCa -3'
miRNA:   3'- gguAGAGUCCGCGC------UGGuAGCu------GUCG- -5'
18407 5' -54.4 NC_004681.1 + 53196 0.67 0.79887
Target:  5'- cUCAUCcCAGGCaGUGA-CGUCGAUguAGCg -3'
miRNA:   3'- -GGUAGaGUCCG-CGCUgGUAGCUG--UCG- -5'
18407 5' -54.4 NC_004681.1 + 30720 0.67 0.79887
Target:  5'- cCCAcaUguGGgGCGAgC-UCGACGGCa -3'
miRNA:   3'- -GGUagAguCCgCGCUgGuAGCUGUCG- -5'
18407 5' -54.4 NC_004681.1 + 75580 0.67 0.789383
Target:  5'- gCGUCUgcugagCGGGUaguggucaGCGACUGUCGAgGGCu -3'
miRNA:   3'- gGUAGA------GUCCG--------CGCUGGUAGCUgUCG- -5'
18407 5' -54.4 NC_004681.1 + 29829 0.68 0.769951
Target:  5'- aCAUCUCgaaAGcGCGCGugUAUCaGCuGCg -3'
miRNA:   3'- gGUAGAG---UC-CGCGCugGUAGcUGuCG- -5'
18407 5' -54.4 NC_004681.1 + 57399 0.68 0.769951
Target:  5'- aCAUCUCAGcGCGCu-CCG-CGAUgcuGGCg -3'
miRNA:   3'- gGUAGAGUC-CGCGcuGGUaGCUG---UCG- -5'
18407 5' -54.4 NC_004681.1 + 45231 0.68 0.760027
Target:  5'- aCgGUCguugUAGGUGUaGACCugcgCGACGGCg -3'
miRNA:   3'- -GgUAGa---GUCCGCG-CUGGua--GCUGUCG- -5'
18407 5' -54.4 NC_004681.1 + 35800 0.68 0.760027
Target:  5'- uCCAUUgcgGGGCGCGGCCAg-GACGa- -3'
miRNA:   3'- -GGUAGag-UCCGCGCUGGUagCUGUcg -5'
18407 5' -54.4 NC_004681.1 + 12555 0.68 0.760027
Target:  5'- aCCG-CUCGuGGcCGgGGCC-UCGACGGUg -3'
miRNA:   3'- -GGUaGAGU-CC-GCgCUGGuAGCUGUCG- -5'
18407 5' -54.4 NC_004681.1 + 41184 0.68 0.749979
Target:  5'- aCCAacgCUgAGGCGUucggugaGCaCAUCGGCGGCg -3'
miRNA:   3'- -GGUa--GAgUCCGCGc------UG-GUAGCUGUCG- -5'
18407 5' -54.4 NC_004681.1 + 33404 0.68 0.743895
Target:  5'- aCGUCcCGgcguacaccgcGGCGCGACCGgcgucgaugacaccCGGCAGCg -3'
miRNA:   3'- gGUAGaGU-----------CCGCGCUGGUa-------------GCUGUCG- -5'
18407 5' -54.4 NC_004681.1 + 13031 0.68 0.739817
Target:  5'- gCCG-CUCAGG-GCcuuuCCGUUGACAGUg -3'
miRNA:   3'- -GGUaGAGUCCgCGcu--GGUAGCUGUCG- -5'
18407 5' -54.4 NC_004681.1 + 69142 0.68 0.739817
Target:  5'- gCCAUCggugucgCAGGUGCGGCCcggUGuCAGg -3'
miRNA:   3'- -GGUAGa------GUCCGCGCUGGua-GCuGUCg -5'
18407 5' -54.4 NC_004681.1 + 71535 0.68 0.729552
Target:  5'- uCUAUCUCAcGCGCGAgCAUC-AUGGUg -3'
miRNA:   3'- -GGUAGAGUcCGCGCUgGUAGcUGUCG- -5'
18407 5' -54.4 NC_004681.1 + 62792 0.69 0.708756
Target:  5'- uCCGcCUCAuccGGCGCcgacGACgCAUCGuCAGCa -3'
miRNA:   3'- -GGUaGAGU---CCGCG----CUG-GUAGCuGUCG- -5'
18407 5' -54.4 NC_004681.1 + 17115 0.69 0.708756
Target:  5'- -gAUCgCGGGCGCGuucuCCGaaauccuguUCGGCGGCc -3'
miRNA:   3'- ggUAGaGUCCGCGCu---GGU---------AGCUGUCG- -5'
18407 5' -54.4 NC_004681.1 + 30034 0.69 0.677051
Target:  5'- aCCGUCaUCGccgcCGCGGCCAUCGGCcucggAGCu -3'
miRNA:   3'- -GGUAG-AGUcc--GCGCUGGUAGCUG-----UCG- -5'
18407 5' -54.4 NC_004681.1 + 23539 0.7 0.666388
Target:  5'- cCCAUCagaacugCGGGaGUGGCCGaggUCGACGGUg -3'
miRNA:   3'- -GGUAGa------GUCCgCGCUGGU---AGCUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.