miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18408 3' -52.7 NC_004681.1 + 62115 0.66 0.917969
Target:  5'- uGCAGUCGguggaCGAGCGCaucaUCGGcCCCg -3'
miRNA:   3'- -UGUUAGCagga-GUUCGUG----AGCCuGGG- -5'
18408 3' -52.7 NC_004681.1 + 59087 0.66 0.905259
Target:  5'- cACGAg-GUCUUCGAGCACcugggCGG-CCUg -3'
miRNA:   3'- -UGUUagCAGGAGUUCGUGa----GCCuGGG- -5'
18408 3' -52.7 NC_004681.1 + 24825 0.66 0.905259
Target:  5'- cGCGGUCGaCCUCAucggcgucggcGGCGCgggCGGcgGCCg -3'
miRNA:   3'- -UGUUAGCaGGAGU-----------UCGUGa--GCC--UGGg -5'
18408 3' -52.7 NC_004681.1 + 49921 0.66 0.898502
Target:  5'- ---cUUGUCCUCGgcGGCAUUCGGGuuguuuucgaUCCa -3'
miRNA:   3'- uguuAGCAGGAGU--UCGUGAGCCU----------GGG- -5'
18408 3' -52.7 NC_004681.1 + 65783 0.66 0.898502
Target:  5'- gGCGGaguUCGUCCgUCucGGC-CUCGGccGCCCc -3'
miRNA:   3'- -UGUU---AGCAGG-AGu-UCGuGAGCC--UGGG- -5'
18408 3' -52.7 NC_004681.1 + 49668 0.67 0.884205
Target:  5'- uGCAGUCGUUggu--GC-CUCGGGCCUg -3'
miRNA:   3'- -UGUUAGCAGgaguuCGuGAGCCUGGG- -5'
18408 3' -52.7 NC_004681.1 + 28663 0.67 0.868893
Target:  5'- cACGGUCGgUCUCAAcGCACccgCGGGCgCu -3'
miRNA:   3'- -UGUUAGCaGGAGUU-CGUGa--GCCUGgG- -5'
18408 3' -52.7 NC_004681.1 + 9894 0.67 0.868893
Target:  5'- ---cUCGUCCUCGAccaGCUUGGcuucaGCCCg -3'
miRNA:   3'- uguuAGCAGGAGUUcg-UGAGCC-----UGGG- -5'
18408 3' -52.7 NC_004681.1 + 54134 0.67 0.852614
Target:  5'- -------cUCUCGGGCGCgcggCGGACCCu -3'
miRNA:   3'- uguuagcaGGAGUUCGUGa---GCCUGGG- -5'
18408 3' -52.7 NC_004681.1 + 55524 0.67 0.852614
Target:  5'- uGCcGUCGUCCUCAuuGCGCg-GGucaguuacgaccGCCCa -3'
miRNA:   3'- -UGuUAGCAGGAGUu-CGUGagCC------------UGGG- -5'
18408 3' -52.7 NC_004681.1 + 21770 0.68 0.84413
Target:  5'- uCGAcCGUCg-CAAGaaACUCGGACCCu -3'
miRNA:   3'- uGUUaGCAGgaGUUCg-UGAGCCUGGG- -5'
18408 3' -52.7 NC_004681.1 + 67625 0.68 0.84413
Target:  5'- cACGAgggUGUaCCUCGAGUACUCauacGACUCg -3'
miRNA:   3'- -UGUUa--GCA-GGAGUUCGUGAGc---CUGGG- -5'
18408 3' -52.7 NC_004681.1 + 51188 0.68 0.826514
Target:  5'- gGCcGUCGUCUU-GGGCGCUCuGGACUUc -3'
miRNA:   3'- -UGuUAGCAGGAgUUCGUGAG-CCUGGG- -5'
18408 3' -52.7 NC_004681.1 + 45731 0.7 0.737429
Target:  5'- gACGAUC-UCCgCGAGCuuguggaACUCGGuACCCu -3'
miRNA:   3'- -UGUUAGcAGGaGUUCG-------UGAGCC-UGGG- -5'
18408 3' -52.7 NC_004681.1 + 56346 0.71 0.674541
Target:  5'- uGCAGcgCGcCUUCAAGCGggUGGACCCc -3'
miRNA:   3'- -UGUUa-GCaGGAGUUCGUgaGCCUGGG- -5'
18408 3' -52.7 NC_004681.1 + 55051 0.72 0.630984
Target:  5'- gGCGGUCGUCC---AGCACgaacaGGACCUu -3'
miRNA:   3'- -UGUUAGCAGGaguUCGUGag---CCUGGG- -5'
18408 3' -52.7 NC_004681.1 + 823 0.72 0.609172
Target:  5'- cCAGUCGUCCUCGauucccggcaGGCAgacCUCGcauGGCCCc -3'
miRNA:   3'- uGUUAGCAGGAGU----------UCGU---GAGC---CUGGG- -5'
18408 3' -52.7 NC_004681.1 + 62947 0.74 0.512929
Target:  5'- cGCGGUCcUUCUCGGcGCGCUCGGugcGCCCc -3'
miRNA:   3'- -UGUUAGcAGGAGUU-CGUGAGCC---UGGG- -5'
18408 3' -52.7 NC_004681.1 + 55815 0.74 0.472104
Target:  5'- gACGGUCGaugaCCUCAAgGCGCUCGGcaucaccgACCCc -3'
miRNA:   3'- -UGUUAGCa---GGAGUU-CGUGAGCC--------UGGG- -5'
18408 3' -52.7 NC_004681.1 + 32061 0.75 0.442591
Target:  5'- cGCAAggaaggCGUCCUCGAGaaGCU-GGACCCg -3'
miRNA:   3'- -UGUUa-----GCAGGAGUUCg-UGAgCCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.