miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18409 3' -50.8 NC_004681.1 + 28004 0.66 0.958661
Target:  5'- -gCCCCGCgug-CCGCUAcUgGACGa -3'
miRNA:   3'- caGGGGUGauuaGGCGAUaAgCUGUg -5'
18409 3' -50.8 NC_004681.1 + 62803 0.66 0.950124
Target:  5'- -cCCCCACcccGUCCGCcucAUcCGGCGCc -3'
miRNA:   3'- caGGGGUGau-UAGGCGa--UAaGCUGUG- -5'
18409 3' -50.8 NC_004681.1 + 58415 0.66 0.950124
Target:  5'- aGUCCCgCACcuucUCCGCggc-CGACGCc -3'
miRNA:   3'- -CAGGG-GUGauu-AGGCGauaaGCUGUG- -5'
18409 3' -50.8 NC_004681.1 + 8972 0.66 0.940486
Target:  5'- cUCCUCGgcc-UCuCGCUGUUCGGCGCc -3'
miRNA:   3'- cAGGGGUgauuAG-GCGAUAAGCUGUG- -5'
18409 3' -50.8 NC_004681.1 + 13123 0.66 0.940486
Target:  5'- -gCCCCGCUGcccgccaCCGCccUUCGugGCa -3'
miRNA:   3'- caGGGGUGAUua-----GGCGauAAGCugUG- -5'
18409 3' -50.8 NC_004681.1 + 32534 0.67 0.935246
Target:  5'- aGUUCCUGgUGG-CCGCUGgcaucUUCGACGCc -3'
miRNA:   3'- -CAGGGGUgAUUaGGCGAU-----AAGCUGUG- -5'
18409 3' -50.8 NC_004681.1 + 60585 0.67 0.923912
Target:  5'- -gCCgCCACUAAUcCCGCUgcgcaagcucggGUUCGuCGCu -3'
miRNA:   3'- caGG-GGUGAUUA-GGCGA------------UAAGCuGUG- -5'
18409 3' -50.8 NC_004681.1 + 65926 0.67 0.922114
Target:  5'- gGUCCCucacgguggCACUGAccucuggcaugacaUCCGCUA--CGGCACg -3'
miRNA:   3'- -CAGGG---------GUGAUU--------------AGGCGAUaaGCUGUG- -5'
18409 3' -50.8 NC_004681.1 + 47244 0.67 0.91144
Target:  5'- cUCCUCGCaGAacUCgCGCaGUUCGGCGCg -3'
miRNA:   3'- cAGGGGUGaUU--AG-GCGaUAAGCUGUG- -5'
18409 3' -50.8 NC_004681.1 + 33265 0.69 0.841878
Target:  5'- gGUCCUCGCaguUCCGCUGccgggugucaUCGACGCc -3'
miRNA:   3'- -CAGGGGUGauuAGGCGAUa---------AGCUGUG- -5'
18409 3' -50.8 NC_004681.1 + 47970 0.73 0.622718
Target:  5'- -aCCCCAagucacGUCCGCaUGUUCGACAUc -3'
miRNA:   3'- caGGGGUgau---UAGGCG-AUAAGCUGUG- -5'
18409 3' -50.8 NC_004681.1 + 9368 0.74 0.611556
Target:  5'- -aCCCCGCUGAUcCCGCUG---GGCACc -3'
miRNA:   3'- caGGGGUGAUUA-GGCGAUaagCUGUG- -5'
18409 3' -50.8 NC_004681.1 + 21144 1.11 0.003037
Target:  5'- gGUCCCCACUAAUCCGCUAUUCGACACa -3'
miRNA:   3'- -CAGGGGUGAUUAGGCGAUAAGCUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.