miRNA display CGI


Results 1 - 20 of 26 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18409 5' -46.1 NC_004681.1 + 47333 0.66 0.999329
Target:  5'- cGGAUggucUC-AUUGucgGCGGUgCGGAUGGACu -3'
miRNA:   3'- -CCUAa---AGcUAAU---UGCCG-GCUUACCUG- -5'
18409 5' -46.1 NC_004681.1 + 8630 0.66 0.999329
Target:  5'- gGGGUUcUGGccGAUGGCCGcggGGGCg -3'
miRNA:   3'- -CCUAAaGCUaaUUGCCGGCuuaCCUG- -5'
18409 5' -46.1 NC_004681.1 + 7355 0.66 0.999161
Target:  5'- -----cCGAggugGACGGCCGcgucGUGGAUg -3'
miRNA:   3'- ccuaaaGCUaa--UUGCCGGCu---UACCUG- -5'
18409 5' -46.1 NC_004681.1 + 54744 0.66 0.999161
Target:  5'- cGGGUguagUCGuagggugAGCGGCCGuucacggGGAUa -3'
miRNA:   3'- -CCUAa---AGCuaa----UUGCCGGCuua----CCUG- -5'
18409 5' -46.1 NC_004681.1 + 43771 0.66 0.998716
Target:  5'- uGGAggggUUGAUcGGCgGGCUGAA-GGGCg -3'
miRNA:   3'- -CCUaa--AGCUAaUUG-CCGGCUUaCCUG- -5'
18409 5' -46.1 NC_004681.1 + 69273 0.66 0.998716
Target:  5'- uGAUgggcCGAUcUGAUGGaCCGcGUGGACg -3'
miRNA:   3'- cCUAaa--GCUA-AUUGCC-GGCuUACCUG- -5'
18409 5' -46.1 NC_004681.1 + 69015 0.67 0.998427
Target:  5'- ---cUUCGGUggcGGCGGCCGugacGAUGGuCa -3'
miRNA:   3'- ccuaAAGCUAa--UUGCCGGC----UUACCuG- -5'
18409 5' -46.1 NC_004681.1 + 57431 0.67 0.998427
Target:  5'- cGGuacgCGAgcuuGCGGCgGuAGUGGACu -3'
miRNA:   3'- -CCuaaaGCUaau-UGCCGgC-UUACCUG- -5'
18409 5' -46.1 NC_004681.1 + 62017 0.67 0.998084
Target:  5'- ----cUCGAc--GCGGCCGug-GGACa -3'
miRNA:   3'- ccuaaAGCUaauUGCCGGCuuaCCUG- -5'
18409 5' -46.1 NC_004681.1 + 46702 0.67 0.998084
Target:  5'- gGGGUccUCGGcgaGugGGCCGGucUGGGCu -3'
miRNA:   3'- -CCUAa-AGCUaa-UugCCGGCUu-ACCUG- -5'
18409 5' -46.1 NC_004681.1 + 65231 0.67 0.99768
Target:  5'- cGGAgacgCGGUaguugUGGCGGCCGuacuucaGGGCg -3'
miRNA:   3'- -CCUaaa-GCUA-----AUUGCCGGCuua----CCUG- -5'
18409 5' -46.1 NC_004681.1 + 63550 0.67 0.997208
Target:  5'- uGGGUUcUUGAUc--CGGCCGAGgcUGGAa -3'
miRNA:   3'- -CCUAA-AGCUAauuGCCGGCUU--ACCUg -5'
18409 5' -46.1 NC_004681.1 + 10527 0.67 0.996659
Target:  5'- aGGGUggCGAUgacgUAGCGGuCCaGAAUGGcCu -3'
miRNA:   3'- -CCUAaaGCUA----AUUGCC-GG-CUUACCuG- -5'
18409 5' -46.1 NC_004681.1 + 53015 0.68 0.994456
Target:  5'- ----gUCGAUgAACGGCuCGGAgucGGGCa -3'
miRNA:   3'- ccuaaAGCUAaUUGCCG-GCUUa--CCUG- -5'
18409 5' -46.1 NC_004681.1 + 25544 0.68 0.992424
Target:  5'- ----gUgGAU--GCGGCCGGAUGGGa -3'
miRNA:   3'- ccuaaAgCUAauUGCCGGCUUACCUg -5'
18409 5' -46.1 NC_004681.1 + 32023 0.68 0.992424
Target:  5'- cGGGUgUCGGc--ACGGCCGGugugauccUGGGCa -3'
miRNA:   3'- -CCUAaAGCUaauUGCCGGCUu-------ACCUG- -5'
18409 5' -46.1 NC_004681.1 + 31068 0.69 0.991206
Target:  5'- ---cUUCGugUGGCGGCCGAAcuggcaGGACg -3'
miRNA:   3'- ccuaAAGCuaAUUGCCGGCUUa-----CCUG- -5'
18409 5' -46.1 NC_004681.1 + 37060 0.69 0.989838
Target:  5'- gGGcgUUCcggUGACGGCCGccgcGUGGAg -3'
miRNA:   3'- -CCuaAAGcuaAUUGCCGGCu---UACCUg -5'
18409 5' -46.1 NC_004681.1 + 9867 0.69 0.989838
Target:  5'- -----cCGGUUGGCguaGGCgGAGUGGACc -3'
miRNA:   3'- ccuaaaGCUAAUUG---CCGgCUUACCUG- -5'
18409 5' -46.1 NC_004681.1 + 66399 0.71 0.97215
Target:  5'- aGGAaggUCGGUauGCaGCCGGAUGGGu -3'
miRNA:   3'- -CCUaa-AGCUAauUGcCGGCUUACCUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.