miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18409 5' -46.1 NC_004681.1 + 21178 1.15 0.006589
Target:  5'- uGGAUUUCGAUUAACGGCCGAAUGGACa -3'
miRNA:   3'- -CCUAAAGCUAAUUGCCGGCUUACCUG- -5'
18409 5' -46.1 NC_004681.1 + 2566 0.79 0.645098
Target:  5'- cGGAguaUUCGAc--GCGGCCGAagaGUGGGCg -3'
miRNA:   3'- -CCUa--AAGCUaauUGCCGGCU---UACCUG- -5'
18409 5' -46.1 NC_004681.1 + 12055 0.79 0.67919
Target:  5'- ----aUCGGcgUUGACGGCCGcAUGGACg -3'
miRNA:   3'- ccuaaAGCU--AAUUGCCGGCuUACCUG- -5'
18409 5' -46.1 NC_004681.1 + 19617 0.72 0.938837
Target:  5'- cGGcgUggUCGA-UGACGGCgaGggUGGGCa -3'
miRNA:   3'- -CCuaA--AGCUaAUUGCCGg-CuuACCUG- -5'
18409 5' -46.1 NC_004681.1 + 8962 0.72 0.94885
Target:  5'- uGGAUgccUUCGAgcaGGCGGCCc--UGGACg -3'
miRNA:   3'- -CCUA---AAGCUaa-UUGCCGGcuuACCUG- -5'
18409 5' -46.1 NC_004681.1 + 62534 0.72 0.953421
Target:  5'- cGGGUUUCcug-GGCGGCgGAGaGGGCg -3'
miRNA:   3'- -CCUAAAGcuaaUUGCCGgCUUaCCUG- -5'
18409 5' -46.1 NC_004681.1 + 66399 0.71 0.97215
Target:  5'- aGGAaggUCGGUauGCaGCCGGAUGGGu -3'
miRNA:   3'- -CCUaa-AGCUAauUGcCGGCUUACCUg -5'
18409 5' -46.1 NC_004681.1 + 9867 0.69 0.989838
Target:  5'- -----cCGGUUGGCguaGGCgGAGUGGACc -3'
miRNA:   3'- ccuaaaGCUAAUUG---CCGgCUUACCUG- -5'
18409 5' -46.1 NC_004681.1 + 37060 0.69 0.989838
Target:  5'- gGGcgUUCcggUGACGGCCGccgcGUGGAg -3'
miRNA:   3'- -CCuaAAGcuaAUUGCCGGCu---UACCUg -5'
18409 5' -46.1 NC_004681.1 + 31068 0.69 0.991206
Target:  5'- ---cUUCGugUGGCGGCCGAAcuggcaGGACg -3'
miRNA:   3'- ccuaAAGCuaAUUGCCGGCUUa-----CCUG- -5'
18409 5' -46.1 NC_004681.1 + 25544 0.68 0.992424
Target:  5'- ----gUgGAU--GCGGCCGGAUGGGa -3'
miRNA:   3'- ccuaaAgCUAauUGCCGGCUUACCUg -5'
18409 5' -46.1 NC_004681.1 + 32023 0.68 0.992424
Target:  5'- cGGGUgUCGGc--ACGGCCGGugugauccUGGGCa -3'
miRNA:   3'- -CCUAaAGCUaauUGCCGGCUu-------ACCUG- -5'
18409 5' -46.1 NC_004681.1 + 53015 0.68 0.994456
Target:  5'- ----gUCGAUgAACGGCuCGGAgucGGGCa -3'
miRNA:   3'- ccuaaAGCUAaUUGCCG-GCUUa--CCUG- -5'
18409 5' -46.1 NC_004681.1 + 10527 0.67 0.996659
Target:  5'- aGGGUggCGAUgacgUAGCGGuCCaGAAUGGcCu -3'
miRNA:   3'- -CCUAaaGCUA----AUUGCC-GG-CUUACCuG- -5'
18409 5' -46.1 NC_004681.1 + 63550 0.67 0.997208
Target:  5'- uGGGUUcUUGAUc--CGGCCGAGgcUGGAa -3'
miRNA:   3'- -CCUAA-AGCUAauuGCCGGCUU--ACCUg -5'
18409 5' -46.1 NC_004681.1 + 65231 0.67 0.99768
Target:  5'- cGGAgacgCGGUaguugUGGCGGCCGuacuucaGGGCg -3'
miRNA:   3'- -CCUaaa-GCUA-----AUUGCCGGCuua----CCUG- -5'
18409 5' -46.1 NC_004681.1 + 46702 0.67 0.998084
Target:  5'- gGGGUccUCGGcgaGugGGCCGGucUGGGCu -3'
miRNA:   3'- -CCUAa-AGCUaa-UugCCGGCUu-ACCUG- -5'
18409 5' -46.1 NC_004681.1 + 62017 0.67 0.998084
Target:  5'- ----cUCGAc--GCGGCCGug-GGACa -3'
miRNA:   3'- ccuaaAGCUaauUGCCGGCuuaCCUG- -5'
18409 5' -46.1 NC_004681.1 + 69015 0.67 0.998427
Target:  5'- ---cUUCGGUggcGGCGGCCGugacGAUGGuCa -3'
miRNA:   3'- ccuaAAGCUAa--UUGCCGGC----UUACCuG- -5'
18409 5' -46.1 NC_004681.1 + 57431 0.67 0.998427
Target:  5'- cGGuacgCGAgcuuGCGGCgGuAGUGGACu -3'
miRNA:   3'- -CCuaaaGCUaau-UGCCGgC-UUACCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.