Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18409 | 5' | -46.1 | NC_004681.1 | + | 69273 | 0.66 | 0.998716 |
Target: 5'- uGAUgggcCGAUcUGAUGGaCCGcGUGGACg -3' miRNA: 3'- cCUAaa--GCUA-AUUGCC-GGCuUACCUG- -5' |
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18409 | 5' | -46.1 | NC_004681.1 | + | 69015 | 0.67 | 0.998427 |
Target: 5'- ---cUUCGGUggcGGCGGCCGugacGAUGGuCa -3' miRNA: 3'- ccuaAAGCUAa--UUGCCGGC----UUACCuG- -5' |
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18409 | 5' | -46.1 | NC_004681.1 | + | 66399 | 0.71 | 0.97215 |
Target: 5'- aGGAaggUCGGUauGCaGCCGGAUGGGu -3' miRNA: 3'- -CCUaa-AGCUAauUGcCGGCUUACCUg -5' |
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18409 | 5' | -46.1 | NC_004681.1 | + | 65231 | 0.67 | 0.99768 |
Target: 5'- cGGAgacgCGGUaguugUGGCGGCCGuacuucaGGGCg -3' miRNA: 3'- -CCUaaa-GCUA-----AUUGCCGGCuua----CCUG- -5' |
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18409 | 5' | -46.1 | NC_004681.1 | + | 63550 | 0.67 | 0.997208 |
Target: 5'- uGGGUUcUUGAUc--CGGCCGAGgcUGGAa -3' miRNA: 3'- -CCUAA-AGCUAauuGCCGGCUU--ACCUg -5' |
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18409 | 5' | -46.1 | NC_004681.1 | + | 62534 | 0.72 | 0.953421 |
Target: 5'- cGGGUUUCcug-GGCGGCgGAGaGGGCg -3' miRNA: 3'- -CCUAAAGcuaaUUGCCGgCUUaCCUG- -5' |
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18409 | 5' | -46.1 | NC_004681.1 | + | 62017 | 0.67 | 0.998084 |
Target: 5'- ----cUCGAc--GCGGCCGug-GGACa -3' miRNA: 3'- ccuaaAGCUaauUGCCGGCuuaCCUG- -5' |
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18409 | 5' | -46.1 | NC_004681.1 | + | 57431 | 0.67 | 0.998427 |
Target: 5'- cGGuacgCGAgcuuGCGGCgGuAGUGGACu -3' miRNA: 3'- -CCuaaaGCUaau-UGCCGgC-UUACCUG- -5' |
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18409 | 5' | -46.1 | NC_004681.1 | + | 54744 | 0.66 | 0.999161 |
Target: 5'- cGGGUguagUCGuagggugAGCGGCCGuucacggGGAUa -3' miRNA: 3'- -CCUAa---AGCuaa----UUGCCGGCuua----CCUG- -5' |
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18409 | 5' | -46.1 | NC_004681.1 | + | 53015 | 0.68 | 0.994456 |
Target: 5'- ----gUCGAUgAACGGCuCGGAgucGGGCa -3' miRNA: 3'- ccuaaAGCUAaUUGCCG-GCUUa--CCUG- -5' |
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18409 | 5' | -46.1 | NC_004681.1 | + | 47333 | 0.66 | 0.999329 |
Target: 5'- cGGAUggucUC-AUUGucgGCGGUgCGGAUGGACu -3' miRNA: 3'- -CCUAa---AGcUAAU---UGCCG-GCUUACCUG- -5' |
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18409 | 5' | -46.1 | NC_004681.1 | + | 46702 | 0.67 | 0.998084 |
Target: 5'- gGGGUccUCGGcgaGugGGCCGGucUGGGCu -3' miRNA: 3'- -CCUAa-AGCUaa-UugCCGGCUu-ACCUG- -5' |
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18409 | 5' | -46.1 | NC_004681.1 | + | 43771 | 0.66 | 0.998716 |
Target: 5'- uGGAggggUUGAUcGGCgGGCUGAA-GGGCg -3' miRNA: 3'- -CCUaa--AGCUAaUUG-CCGGCUUaCCUG- -5' |
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18409 | 5' | -46.1 | NC_004681.1 | + | 37060 | 0.69 | 0.989838 |
Target: 5'- gGGcgUUCcggUGACGGCCGccgcGUGGAg -3' miRNA: 3'- -CCuaAAGcuaAUUGCCGGCu---UACCUg -5' |
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18409 | 5' | -46.1 | NC_004681.1 | + | 32023 | 0.68 | 0.992424 |
Target: 5'- cGGGUgUCGGc--ACGGCCGGugugauccUGGGCa -3' miRNA: 3'- -CCUAaAGCUaauUGCCGGCUu-------ACCUG- -5' |
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18409 | 5' | -46.1 | NC_004681.1 | + | 31068 | 0.69 | 0.991206 |
Target: 5'- ---cUUCGugUGGCGGCCGAAcuggcaGGACg -3' miRNA: 3'- ccuaAAGCuaAUUGCCGGCUUa-----CCUG- -5' |
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18409 | 5' | -46.1 | NC_004681.1 | + | 25544 | 0.68 | 0.992424 |
Target: 5'- ----gUgGAU--GCGGCCGGAUGGGa -3' miRNA: 3'- ccuaaAgCUAauUGCCGGCUUACCUg -5' |
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18409 | 5' | -46.1 | NC_004681.1 | + | 21178 | 1.15 | 0.006589 |
Target: 5'- uGGAUUUCGAUUAACGGCCGAAUGGACa -3' miRNA: 3'- -CCUAAAGCUAAUUGCCGGCUUACCUG- -5' |
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18409 | 5' | -46.1 | NC_004681.1 | + | 19617 | 0.72 | 0.938837 |
Target: 5'- cGGcgUggUCGA-UGACGGCgaGggUGGGCa -3' miRNA: 3'- -CCuaA--AGCUaAUUGCCGg-CuuACCUG- -5' |
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18409 | 5' | -46.1 | NC_004681.1 | + | 12055 | 0.79 | 0.67919 |
Target: 5'- ----aUCGGcgUUGACGGCCGcAUGGACg -3' miRNA: 3'- ccuaaAGCU--AAUUGCCGGCuUACCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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