miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1841 3' -60.7 NC_001347.2 + 120818 0.66 0.799268
Target:  5'- cACcgGCgGcGGCGCCaUGGCgggCGCCUCCa -3'
miRNA:   3'- uUGa-CGaC-CCGUGGcACCG---GUGGAGG- -5'
1841 3' -60.7 NC_001347.2 + 29111 0.66 0.798411
Target:  5'- cGCUGCUugGGGCauaaaacACCGacGCUACUUCCc -3'
miRNA:   3'- uUGACGA--CCCG-------UGGCacCGGUGGAGG- -5'
1841 3' -60.7 NC_001347.2 + 20553 0.66 0.790634
Target:  5'- -uCUGCcGGaGCACCGUGGgUGCCg-- -3'
miRNA:   3'- uuGACGaCC-CGUGGCACCgGUGGagg -5'
1841 3' -60.7 NC_001347.2 + 86452 0.66 0.789763
Target:  5'- cGGCUGCaGGGCuuGCUGUgcaaccauauagcGGuCCACCgUCCg -3'
miRNA:   3'- -UUGACGaCCCG--UGGCA-------------CC-GGUGG-AGG- -5'
1841 3' -60.7 NC_001347.2 + 152663 0.66 0.781868
Target:  5'- gAGCgUGCaaacGGGCguGCUG-GGCgGCCUCCg -3'
miRNA:   3'- -UUG-ACGa---CCCG--UGGCaCCGgUGGAGG- -5'
1841 3' -60.7 NC_001347.2 + 216760 0.66 0.780985
Target:  5'- gGGCgGCccGGGcCGCCGUgcuggagGGCCGCC-CCa -3'
miRNA:   3'- -UUGaCGa-CCC-GUGGCA-------CCGGUGGaGG- -5'
1841 3' -60.7 NC_001347.2 + 163000 0.66 0.772981
Target:  5'- cGACUGCgGuGGUGCCuccGCCGCCUCa -3'
miRNA:   3'- -UUGACGaC-CCGUGGcacCGGUGGAGg -5'
1841 3' -60.7 NC_001347.2 + 41429 0.66 0.772981
Target:  5'- -cCUGCUG-GCGCCG-GcGCUGCCaUCCu -3'
miRNA:   3'- uuGACGACcCGUGGCaC-CGGUGG-AGG- -5'
1841 3' -60.7 NC_001347.2 + 211845 0.66 0.763978
Target:  5'- --aUGCUGGGCuccAUCGagGGCCugCgcgCCu -3'
miRNA:   3'- uugACGACCCG---UGGCa-CCGGugGa--GG- -5'
1841 3' -60.7 NC_001347.2 + 29051 0.66 0.763978
Target:  5'- cGCUGCcaa-CGCCGUcaaGGCCGCCUCUu -3'
miRNA:   3'- uUGACGacccGUGGCA---CCGGUGGAGG- -5'
1841 3' -60.7 NC_001347.2 + 164157 0.67 0.745661
Target:  5'- uGCUGUgGGGCGCCGacgcGCaCACCUgCg -3'
miRNA:   3'- uUGACGaCCCGUGGCac--CG-GUGGAgG- -5'
1841 3' -60.7 NC_001347.2 + 73642 0.67 0.736362
Target:  5'- cGCUGCcGGGCcucgGCCGccGCCGCCaCCc -3'
miRNA:   3'- uUGACGaCCCG----UGGCacCGGUGGaGG- -5'
1841 3' -60.7 NC_001347.2 + 118231 0.67 0.717523
Target:  5'- -cCUGCcgucgaGGGCccgGCCGUuGCCGCCUCa -3'
miRNA:   3'- uuGACGa-----CCCG---UGGCAcCGGUGGAGg -5'
1841 3' -60.7 NC_001347.2 + 73342 0.67 0.717523
Target:  5'- ---cGUUGGGCACCGUcaucgugguGGCgagCGCgCUCCg -3'
miRNA:   3'- uugaCGACCCGUGGCA---------CCG---GUG-GAGG- -5'
1841 3' -60.7 NC_001347.2 + 228019 0.67 0.698419
Target:  5'- gGACgaGCUGGGCGCCGUguucGGgUACUgCCc -3'
miRNA:   3'- -UUGa-CGACCCGUGGCA----CCgGUGGaGG- -5'
1841 3' -60.7 NC_001347.2 + 72769 0.67 0.698419
Target:  5'- gGACUGuCUGcaCACCGUGGCCG--UCCg -3'
miRNA:   3'- -UUGAC-GACccGUGGCACCGGUggAGG- -5'
1841 3' -60.7 NC_001347.2 + 138039 0.68 0.688786
Target:  5'- -cCUGCcc-GCagGCCGUGGCCGCCgCCa -3'
miRNA:   3'- uuGACGaccCG--UGGCACCGGUGGaGG- -5'
1841 3' -60.7 NC_001347.2 + 193223 0.68 0.6694
Target:  5'- gAGgUGCUGGcgGCCGUGGCCugUggcCCg -3'
miRNA:   3'- -UUgACGACCcgUGGCACCGGugGa--GG- -5'
1841 3' -60.7 NC_001347.2 + 37123 0.68 0.649903
Target:  5'- -uCUGcCUGGGCACgcgCGUcGGCCGCgUCg -3'
miRNA:   3'- uuGAC-GACCCGUG---GCA-CCGGUGgAGg -5'
1841 3' -60.7 NC_001347.2 + 89591 0.68 0.640132
Target:  5'- cGCaUGUUGGGCGCuagCGUGGCCguACCUa- -3'
miRNA:   3'- uUG-ACGACCCGUG---GCACCGG--UGGAgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.