miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1841 5' -54 NC_001347.2 + 113791 0.66 0.983411
Target:  5'- gUGGACA----CACGGUGaCGCGGCAg -3'
miRNA:   3'- aGCCUGUucuaGUGCCGC-GCGUUGUa -5'
1841 5' -54 NC_001347.2 + 153221 0.66 0.983411
Target:  5'- cUCGGACGAa---GCGGCaGCgGCGGCAg -3'
miRNA:   3'- -AGCCUGUUcuagUGCCG-CG-CGUUGUa -5'
1841 5' -54 NC_001347.2 + 129770 0.66 0.983411
Target:  5'- gUCGGuGCAcguAGAgcaGCGGCcCGCGACAa -3'
miRNA:   3'- -AGCC-UGU---UCUag-UGCCGcGCGUUGUa -5'
1841 5' -54 NC_001347.2 + 121624 0.66 0.983411
Target:  5'- gUCGGGCAAGcagauGUgGCaGGCGCGUcuCAc -3'
miRNA:   3'- -AGCCUGUUC-----UAgUG-CCGCGCGuuGUa -5'
1841 5' -54 NC_001347.2 + 53707 0.66 0.983411
Target:  5'- aCGGAauuuccuguCAGGAcCACuuucGCGCGCAACAc -3'
miRNA:   3'- aGCCU---------GUUCUaGUGc---CGCGCGUUGUa -5'
1841 5' -54 NC_001347.2 + 164559 0.66 0.981449
Target:  5'- gCGGugGAG-----GGCGCGCGGCAa -3'
miRNA:   3'- aGCCugUUCuagugCCGCGCGUUGUa -5'
1841 5' -54 NC_001347.2 + 88959 0.66 0.981449
Target:  5'- gCGGGCAAGggCAacGCGgGUAGCGUg -3'
miRNA:   3'- aGCCUGUUCuaGUgcCGCgCGUUGUA- -5'
1841 5' -54 NC_001347.2 + 90752 0.66 0.981449
Target:  5'- --cGACGAGGUCuCGcuggauGCGCGCAGCGc -3'
miRNA:   3'- agcCUGUUCUAGuGC------CGCGCGUUGUa -5'
1841 5' -54 NC_001347.2 + 150998 0.66 0.981449
Target:  5'- aUGGagccGCAAGugcucgacuUUACGGUGCGCGGCGa -3'
miRNA:   3'- aGCC----UGUUCu--------AGUGCCGCGCGUUGUa -5'
1841 5' -54 NC_001347.2 + 129812 0.66 0.979317
Target:  5'- -aGGACAGcgcgcgcccggcGGUCACGGaucCGCAACAa -3'
miRNA:   3'- agCCUGUU------------CUAGUGCCgc-GCGUUGUa -5'
1841 5' -54 NC_001347.2 + 213414 0.66 0.979317
Target:  5'- aUGGGCGAG---GCGGCGCGUcuGCAc -3'
miRNA:   3'- aGCCUGUUCuagUGCCGCGCGu-UGUa -5'
1841 5' -54 NC_001347.2 + 89629 0.66 0.979317
Target:  5'- gUGGugGGGAUUccgggggaaugAUGGgGCGCGGCGg -3'
miRNA:   3'- aGCCugUUCUAG-----------UGCCgCGCGUUGUa -5'
1841 5' -54 NC_001347.2 + 89505 0.66 0.979317
Target:  5'- aCGGGCGAGGaUACcuuuaGCGCGCAcgGCAa -3'
miRNA:   3'- aGCCUGUUCUaGUGc----CGCGCGU--UGUa -5'
1841 5' -54 NC_001347.2 + 162066 0.66 0.977009
Target:  5'- gCGGAagcgguAGA-CGCGGCGcCGCAACc- -3'
miRNA:   3'- aGCCUgu----UCUaGUGCCGC-GCGUUGua -5'
1841 5' -54 NC_001347.2 + 72297 0.66 0.977009
Target:  5'- gCGGAgGAGGcUCgACGGCG-GCAGCu- -3'
miRNA:   3'- aGCCUgUUCU-AG-UGCCGCgCGUUGua -5'
1841 5' -54 NC_001347.2 + 193375 0.66 0.977009
Target:  5'- cUUGGGCGcGA-CGCGGaCGCaGCGACAc -3'
miRNA:   3'- -AGCCUGUuCUaGUGCC-GCG-CGUUGUa -5'
1841 5' -54 NC_001347.2 + 164303 0.66 0.977009
Target:  5'- cUGGGCGcGA-CGCGGCGUGCuGCu- -3'
miRNA:   3'- aGCCUGUuCUaGUGCCGCGCGuUGua -5'
1841 5' -54 NC_001347.2 + 85638 0.66 0.974517
Target:  5'- aCGGcaGCGAGAacggcUUACgGGUGCGCAACu- -3'
miRNA:   3'- aGCC--UGUUCU-----AGUG-CCGCGCGUUGua -5'
1841 5' -54 NC_001347.2 + 149577 0.66 0.974517
Target:  5'- aCGGcCGAGAgccagUCGCcaccGGCuGCGCAGCAa -3'
miRNA:   3'- aGCCuGUUCU-----AGUG----CCG-CGCGUUGUa -5'
1841 5' -54 NC_001347.2 + 75014 0.66 0.974517
Target:  5'- gCGGACugcacAAGGUaGCGGCG-GCGACGg -3'
miRNA:   3'- aGCCUG-----UUCUAgUGCCGCgCGUUGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.