miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18410 5' -63.9 NC_004681.1 + 48230 0.66 0.395898
Target:  5'- gCCCUcGCcgaGGCUCgCCAGUCCGAuacGGGCa -3'
miRNA:   3'- aGGGAcCG---CUGGG-GGUCGGGUU---CCCG- -5'
18410 5' -63.9 NC_004681.1 + 38140 0.66 0.395898
Target:  5'- cCCCgaGGCcggauGGCCCUCGGCCUAcguuGGCg -3'
miRNA:   3'- aGGGa-CCG-----CUGGGGGUCGGGUuc--CCG- -5'
18410 5' -63.9 NC_004681.1 + 44339 0.66 0.382541
Target:  5'- cUCCUGGCGAcacacuccacuucguCCCCgAGaCCUGAcccuacGGGCg -3'
miRNA:   3'- aGGGACCGCU---------------GGGGgUC-GGGUU------CCCG- -5'
18410 5' -63.9 NC_004681.1 + 12338 0.66 0.379249
Target:  5'- -aCCgGGCcACCCgacUCAGCCCAGaacGGGCc -3'
miRNA:   3'- agGGaCCGcUGGG---GGUCGGGUU---CCCG- -5'
18410 5' -63.9 NC_004681.1 + 8387 0.66 0.371102
Target:  5'- gUCCUUGGCGGCgUCCGcGCCaccGaGGCu -3'
miRNA:   3'- -AGGGACCGCUGgGGGU-CGGguuC-CCG- -5'
18410 5' -63.9 NC_004681.1 + 3036 0.66 0.363076
Target:  5'- gCCC--GC-ACCCgCGGCgCCAAGGGCc -3'
miRNA:   3'- aGGGacCGcUGGGgGUCG-GGUUCCCG- -5'
18410 5' -63.9 NC_004681.1 + 28497 0.66 0.363076
Target:  5'- gCCggGGUGACCgCCAGgCCAuugacuGGGGUu -3'
miRNA:   3'- aGGgaCCGCUGGgGGUCgGGU------UCCCG- -5'
18410 5' -63.9 NC_004681.1 + 44631 0.66 0.361485
Target:  5'- cUCCUUGGgaaguaaggagaGACCCCCA--CCAAGGGa -3'
miRNA:   3'- -AGGGACCg-----------CUGGGGGUcgGGUUCCCg -5'
18410 5' -63.9 NC_004681.1 + 28404 0.66 0.358318
Target:  5'- -gCCUGGCGGuCaCCCCGGCUCccgcgGagauggagcucgcguGGGGCa -3'
miRNA:   3'- agGGACCGCU-G-GGGGUCGGG-----U---------------UCCCG- -5'
18410 5' -63.9 NC_004681.1 + 30441 0.66 0.355171
Target:  5'- uUCCCccaauGCGaaaGCCCCCgAGCCgaaacuCAGGGGCc -3'
miRNA:   3'- -AGGGac---CGC---UGGGGG-UCGG------GUUCCCG- -5'
18410 5' -63.9 NC_004681.1 + 44982 0.66 0.355171
Target:  5'- gCCCUGcUGcAUCCUCGGCCUcguGGGCg -3'
miRNA:   3'- aGGGACcGC-UGGGGGUCGGGuu-CCCG- -5'
18410 5' -63.9 NC_004681.1 + 44237 0.66 0.355171
Target:  5'- -gCCggugagGGCcaGGCCCgCGGCCuCGGGGGUg -3'
miRNA:   3'- agGGa-----CCG--CUGGGgGUCGG-GUUCCCG- -5'
18410 5' -63.9 NC_004681.1 + 25590 0.66 0.347388
Target:  5'- cCCgCUGaGCGACCaaCCCAGuCCCAcguuucugcgauGGGGa -3'
miRNA:   3'- aGG-GAC-CGCUGG--GGGUC-GGGU------------UCCCg -5'
18410 5' -63.9 NC_004681.1 + 45043 0.66 0.347388
Target:  5'- gCCCgagcucgcggUGGCGGCUCCaccGCgUggGGGCg -3'
miRNA:   3'- aGGG----------ACCGCUGGGGgu-CGgGuuCCCG- -5'
18410 5' -63.9 NC_004681.1 + 19364 0.66 0.347388
Target:  5'- -aCCgGGuCGACCacaCCGGCCU--GGGCg -3'
miRNA:   3'- agGGaCC-GCUGGg--GGUCGGGuuCCCG- -5'
18410 5' -63.9 NC_004681.1 + 29528 0.66 0.347388
Target:  5'- aCCCggugUGGaCGGCUUCCGGCUC--GGGCa -3'
miRNA:   3'- aGGG----ACC-GCUGGGGGUCGGGuuCCCG- -5'
18410 5' -63.9 NC_004681.1 + 24784 0.66 0.347388
Target:  5'- cUCgCUGGCGccacggaaAUUCCCAuGCCCGcauGGGCc -3'
miRNA:   3'- -AGgGACCGC--------UGGGGGU-CGGGUu--CCCG- -5'
18410 5' -63.9 NC_004681.1 + 12208 0.67 0.339727
Target:  5'- uUCCCcGcGCGccgcAUCCCCgguGGCCCGuucuGGGCu -3'
miRNA:   3'- -AGGGaC-CGC----UGGGGG---UCGGGUu---CCCG- -5'
18410 5' -63.9 NC_004681.1 + 15563 0.67 0.339727
Target:  5'- cUUCUGGUGcaucGCaUCCCAGUCCuuGAGGGCu -3'
miRNA:   3'- aGGGACCGC----UG-GGGGUCGGG--UUCCCG- -5'
18410 5' -63.9 NC_004681.1 + 32535 0.67 0.33219
Target:  5'- gUUCCUGGUGGCCgCUGgcaucuucgacGCCCugaaGGGGGCc -3'
miRNA:   3'- -AGGGACCGCUGGgGGU-----------CGGG----UUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.