Results 21 - 40 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
18410 | 5' | -63.9 | NC_004681.1 | + | 69130 | 0.67 | 0.31032 |
Target: 5'- gCCCUGGCcuCCCUC-GCCUAccGGCu -3' miRNA: 3'- aGGGACCGcuGGGGGuCGGGUucCCG- -5' |
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18410 | 5' | -63.9 | NC_004681.1 | + | 10225 | 0.67 | 0.317486 |
Target: 5'- gCCCUGGC--UCCCCGGUUCGcugcGGGUg -3' miRNA: 3'- aGGGACCGcuGGGGGUCGGGUu---CCCG- -5' |
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18410 | 5' | -63.9 | NC_004681.1 | + | 5811 | 0.67 | 0.33219 |
Target: 5'- cUCCaUGaGCGACaggccgcgCUCCAGCCCGucAGGGUu -3' miRNA: 3'- -AGGgAC-CGCUG--------GGGGUCGGGU--UCCCG- -5' |
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18410 | 5' | -63.9 | NC_004681.1 | + | 15563 | 0.67 | 0.339727 |
Target: 5'- cUUCUGGUGcaucGCaUCCCAGUCCuuGAGGGCu -3' miRNA: 3'- aGGGACCGC----UG-GGGGUCGGG--UUCCCG- -5' |
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18410 | 5' | -63.9 | NC_004681.1 | + | 23556 | 0.68 | 0.28223 |
Target: 5'- aCCUUGGCGGCgCCCGaCCCAucagaacugcgggAGuGGCc -3' miRNA: 3'- aGGGACCGCUGgGGGUcGGGU-------------UC-CCG- -5' |
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18410 | 5' | -63.9 | NC_004681.1 | + | 26737 | 0.68 | 0.27634 |
Target: 5'- gCCCcGGCcaaCCUCGGCUaCAAGGGCg -3' miRNA: 3'- aGGGaCCGcugGGGGUCGG-GUUCCCG- -5' |
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18410 | 5' | -63.9 | NC_004681.1 | + | 64814 | 0.68 | 0.296359 |
Target: 5'- uUCCaggugGGCgGACCCaCCAGCgUCAuGGGGCc -3' miRNA: 3'- -AGGga---CCG-CUGGG-GGUCG-GGU-UCCCG- -5' |
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18410 | 5' | -63.9 | NC_004681.1 | + | 40205 | 0.68 | 0.282891 |
Target: 5'- -aCCUGGCGACCCCC------GGGGUg -3' miRNA: 3'- agGGACCGCUGGGGGucggguUCCCG- -5' |
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18410 | 5' | -63.9 | NC_004681.1 | + | 48326 | 0.68 | 0.282891 |
Target: 5'- --aCUGGCGAgCCUCGGC--GAGGGCc -3' miRNA: 3'- aggGACCGCUgGGGGUCGggUUCCCG- -5' |
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18410 | 5' | -63.9 | NC_004681.1 | + | 5300 | 0.68 | 0.269912 |
Target: 5'- aUCUgUGGCGACagCUCGGCCauggcGGGCg -3' miRNA: 3'- -AGGgACCGCUGg-GGGUCGGguu--CCCG- -5' |
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18410 | 5' | -63.9 | NC_004681.1 | + | 23561 | 0.68 | 0.289563 |
Target: 5'- gUCUCUGGCacaguguUCgUCAGCCaCGAGGGCu -3' miRNA: 3'- -AGGGACCGcu-----GGgGGUCGG-GUUCCCG- -5' |
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18410 | 5' | -63.9 | NC_004681.1 | + | 28591 | 0.68 | 0.27634 |
Target: 5'- gCCCggGGUGAgUgugagCCCAGCCCc-GGGCg -3' miRNA: 3'- aGGGa-CCGCUgG-----GGGUCGGGuuCCCG- -5' |
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18410 | 5' | -63.9 | NC_004681.1 | + | 2893 | 0.68 | 0.263604 |
Target: 5'- cUCCCgcuCGACCCCUAcauCCUggGGGCc -3' miRNA: 3'- -AGGGaccGCUGGGGGUc--GGGuuCCCG- -5' |
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18410 | 5' | -63.9 | NC_004681.1 | + | 45509 | 0.68 | 0.269912 |
Target: 5'- ----cGGCGACCCCUAcuaCAAGGGCg -3' miRNA: 3'- agggaCCGCUGGGGGUcggGUUCCCG- -5' |
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18410 | 5' | -63.9 | NC_004681.1 | + | 39094 | 0.68 | 0.296359 |
Target: 5'- gCCCUGGUGGCCaCCuGCgC--GGGCa -3' miRNA: 3'- aGGGACCGCUGGgGGuCGgGuuCCCG- -5' |
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18410 | 5' | -63.9 | NC_004681.1 | + | 48005 | 0.68 | 0.295674 |
Target: 5'- cUCCUGGauuagcgaCGugcagaugguugaGCCCCCcGCCUggGGGCu -3' miRNA: 3'- aGGGACC--------GC-------------UGGGGGuCGGGuuCCCG- -5' |
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18410 | 5' | -63.9 | NC_004681.1 | + | 39218 | 0.69 | 0.224944 |
Target: 5'- -gCCUGGuCGACUgUCAGCUCAccgugcgccgcggcaAGGGCg -3' miRNA: 3'- agGGACC-GCUGGgGGUCGGGU---------------UCCCG- -5' |
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18410 | 5' | -63.9 | NC_004681.1 | + | 18104 | 0.69 | 0.245399 |
Target: 5'- cCCCggcaucGGCG-CCCCCGGCCa---GGCa -3' miRNA: 3'- aGGGa-----CCGCuGGGGGUCGGguucCCG- -5' |
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18410 | 5' | -63.9 | NC_004681.1 | + | 66793 | 0.69 | 0.257417 |
Target: 5'- cUCCCUGG--ACCCCgAGUacgCCAAGGcGCu -3' miRNA: 3'- -AGGGACCgcUGGGGgUCG---GGUUCC-CG- -5' |
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18410 | 5' | -63.9 | NC_004681.1 | + | 7125 | 0.69 | 0.233285 |
Target: 5'- cCCCUccaaccgggaugcGGUGAUCCUgCAGUCCAAGGcGCu -3' miRNA: 3'- aGGGA-------------CCGCUGGGG-GUCGGGUUCC-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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