Results 1 - 20 of 56 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
18410 | 5' | -63.9 | NC_004681.1 | + | 21271 | 1.1 | 0.000208 |
Target: 5'- cUCCCUGGCGACCCCCAGCCCAAGGGCc -3' miRNA: 3'- -AGGGACCGCUGGGGGUCGGGUUCCCG- -5' |
|||||||
18410 | 5' | -63.9 | NC_004681.1 | + | 1533 | 0.78 | 0.053371 |
Target: 5'- cCCCUGGUGACCgggCCAGCCUucagcuGGGCg -3' miRNA: 3'- aGGGACCGCUGGg--GGUCGGGuu----CCCG- -5' |
|||||||
18410 | 5' | -63.9 | NC_004681.1 | + | 32295 | 0.76 | 0.08192 |
Target: 5'- gCUCaacGGCGACCCCCAGCCUu--GGCg -3' miRNA: 3'- aGGGa--CCGCUGGGGGUCGGGuucCCG- -5' |
|||||||
18410 | 5' | -63.9 | NC_004681.1 | + | 14785 | 0.75 | 0.090837 |
Target: 5'- gCCCUGGCcauccugaaggcuGGCgCCCAGCuggcccguaCCGAGGGCg -3' miRNA: 3'- aGGGACCG-------------CUGgGGGUCG---------GGUUCCCG- -5' |
|||||||
18410 | 5' | -63.9 | NC_004681.1 | + | 17548 | 0.75 | 0.091077 |
Target: 5'- cUCCCUGGCGGCaCCCCcuUCaacuGGGGCa -3' miRNA: 3'- -AGGGACCGCUG-GGGGucGGgu--UCCCG- -5' |
|||||||
18410 | 5' | -63.9 | NC_004681.1 | + | 22673 | 0.74 | 0.115348 |
Target: 5'- aUCCCcGGC-ACCgaCCAGCCCAAGGaGUg -3' miRNA: 3'- -AGGGaCCGcUGGg-GGUCGGGUUCC-CG- -5' |
|||||||
18410 | 5' | -63.9 | NC_004681.1 | + | 49548 | 0.74 | 0.109194 |
Target: 5'- gCCCUGGCcuuCCCCCgcgggcaGGCCCGAGG-Ca -3' miRNA: 3'- aGGGACCGcu-GGGGG-------UCGGGUUCCcG- -5' |
|||||||
18410 | 5' | -63.9 | NC_004681.1 | + | 16786 | 0.72 | 0.141867 |
Target: 5'- -gCCUGGCGGCauCCCCGgcauGCCCGAGGa- -3' miRNA: 3'- agGGACCGCUG--GGGGU----CGGGUUCCcg -5' |
|||||||
18410 | 5' | -63.9 | NC_004681.1 | + | 7638 | 0.72 | 0.141867 |
Target: 5'- cUCCCUcaugGGgGACCCCCGGCCCGu---- -3' miRNA: 3'- -AGGGA----CCgCUGGGGGUCGGGUucccg -5' |
|||||||
18410 | 5' | -63.9 | NC_004681.1 | + | 18205 | 0.72 | 0.14932 |
Target: 5'- cUCCC-GGCGcACCCCCGGguguaCCGGgcGGGCa -3' miRNA: 3'- -AGGGaCCGC-UGGGGGUCg----GGUU--CCCG- -5' |
|||||||
18410 | 5' | -63.9 | NC_004681.1 | + | 27598 | 0.71 | 0.169532 |
Target: 5'- aUCUgaGGCGugCCCCAGgUCAGGGucaGCg -3' miRNA: 3'- -AGGgaCCGCugGGGGUCgGGUUCC---CG- -5' |
|||||||
18410 | 5' | -63.9 | NC_004681.1 | + | 10655 | 0.71 | 0.173858 |
Target: 5'- -gCCUGGCG-CCCCCGguGCCCGc-GGCc -3' miRNA: 3'- agGGACCGCuGGGGGU--CGGGUucCCG- -5' |
|||||||
18410 | 5' | -63.9 | NC_004681.1 | + | 63431 | 0.7 | 0.206972 |
Target: 5'- uUCCCUGGCcaccaGGCUUCCAGCCUc--GGCc -3' miRNA: 3'- -AGGGACCG-----CUGGGGGUCGGGuucCCG- -5' |
|||||||
18410 | 5' | -63.9 | NC_004681.1 | + | 40754 | 0.7 | 0.217388 |
Target: 5'- aUUgCUGGCGAucccucuuaUCCCCAGCgCCGAGGa- -3' miRNA: 3'- -AGgGACCGCU---------GGGGGUCG-GGUUCCcg -5' |
|||||||
18410 | 5' | -63.9 | NC_004681.1 | + | 18547 | 0.7 | 0.201927 |
Target: 5'- gCCCgguUGGCGACCUCCAuGCCCuucuGGacaGCg -3' miRNA: 3'- aGGG---ACCGCUGGGGGU-CGGGuu--CC---CG- -5' |
|||||||
18410 | 5' | -63.9 | NC_004681.1 | + | 66793 | 0.69 | 0.257417 |
Target: 5'- cUCCCUGG--ACCCCgAGUacgCCAAGGcGCu -3' miRNA: 3'- -AGGGACCgcUGGGGgUCG---GGUUCC-CG- -5' |
|||||||
18410 | 5' | -63.9 | NC_004681.1 | + | 18104 | 0.69 | 0.245399 |
Target: 5'- cCCCggcaucGGCG-CCCCCGGCCa---GGCa -3' miRNA: 3'- aGGGa-----CCGCuGGGGGUCGGguucCCG- -5' |
|||||||
18410 | 5' | -63.9 | NC_004681.1 | + | 7125 | 0.69 | 0.233285 |
Target: 5'- cCCCUccaaccgggaugcGGUGAUCCUgCAGUCCAAGGcGCu -3' miRNA: 3'- aGGGA-------------CCGCUGGGG-GUCGGGUUCC-CG- -5' |
|||||||
18410 | 5' | -63.9 | NC_004681.1 | + | 48676 | 0.69 | 0.22825 |
Target: 5'- aCCCUGGCGGgCCagcuCCCAuGGGCc -3' miRNA: 3'- aGGGACCGCUgGGggucGGGUuCCCG- -5' |
|||||||
18410 | 5' | -63.9 | NC_004681.1 | + | 39218 | 0.69 | 0.224944 |
Target: 5'- -gCCUGGuCGACUgUCAGCUCAccgugcgccgcggcaAGGGCg -3' miRNA: 3'- agGGACC-GCUGGgGGUCGGGU---------------UCCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home