miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18410 5' -63.9 NC_004681.1 + 21271 1.1 0.000208
Target:  5'- cUCCCUGGCGACCCCCAGCCCAAGGGCc -3'
miRNA:   3'- -AGGGACCGCUGGGGGUCGGGUUCCCG- -5'
18410 5' -63.9 NC_004681.1 + 1533 0.78 0.053371
Target:  5'- cCCCUGGUGACCgggCCAGCCUucagcuGGGCg -3'
miRNA:   3'- aGGGACCGCUGGg--GGUCGGGuu----CCCG- -5'
18410 5' -63.9 NC_004681.1 + 32295 0.76 0.08192
Target:  5'- gCUCaacGGCGACCCCCAGCCUu--GGCg -3'
miRNA:   3'- aGGGa--CCGCUGGGGGUCGGGuucCCG- -5'
18410 5' -63.9 NC_004681.1 + 14785 0.75 0.090837
Target:  5'- gCCCUGGCcauccugaaggcuGGCgCCCAGCuggcccguaCCGAGGGCg -3'
miRNA:   3'- aGGGACCG-------------CUGgGGGUCG---------GGUUCCCG- -5'
18410 5' -63.9 NC_004681.1 + 17548 0.75 0.091077
Target:  5'- cUCCCUGGCGGCaCCCCcuUCaacuGGGGCa -3'
miRNA:   3'- -AGGGACCGCUG-GGGGucGGgu--UCCCG- -5'
18410 5' -63.9 NC_004681.1 + 49548 0.74 0.109194
Target:  5'- gCCCUGGCcuuCCCCCgcgggcaGGCCCGAGG-Ca -3'
miRNA:   3'- aGGGACCGcu-GGGGG-------UCGGGUUCCcG- -5'
18410 5' -63.9 NC_004681.1 + 22673 0.74 0.115348
Target:  5'- aUCCCcGGC-ACCgaCCAGCCCAAGGaGUg -3'
miRNA:   3'- -AGGGaCCGcUGGg-GGUCGGGUUCC-CG- -5'
18410 5' -63.9 NC_004681.1 + 16786 0.72 0.141867
Target:  5'- -gCCUGGCGGCauCCCCGgcauGCCCGAGGa- -3'
miRNA:   3'- agGGACCGCUG--GGGGU----CGGGUUCCcg -5'
18410 5' -63.9 NC_004681.1 + 7638 0.72 0.141867
Target:  5'- cUCCCUcaugGGgGACCCCCGGCCCGu---- -3'
miRNA:   3'- -AGGGA----CCgCUGGGGGUCGGGUucccg -5'
18410 5' -63.9 NC_004681.1 + 18205 0.72 0.14932
Target:  5'- cUCCC-GGCGcACCCCCGGguguaCCGGgcGGGCa -3'
miRNA:   3'- -AGGGaCCGC-UGGGGGUCg----GGUU--CCCG- -5'
18410 5' -63.9 NC_004681.1 + 27598 0.71 0.169532
Target:  5'- aUCUgaGGCGugCCCCAGgUCAGGGucaGCg -3'
miRNA:   3'- -AGGgaCCGCugGGGGUCgGGUUCC---CG- -5'
18410 5' -63.9 NC_004681.1 + 10655 0.71 0.173858
Target:  5'- -gCCUGGCG-CCCCCGguGCCCGc-GGCc -3'
miRNA:   3'- agGGACCGCuGGGGGU--CGGGUucCCG- -5'
18410 5' -63.9 NC_004681.1 + 18547 0.7 0.201927
Target:  5'- gCCCgguUGGCGACCUCCAuGCCCuucuGGacaGCg -3'
miRNA:   3'- aGGG---ACCGCUGGGGGU-CGGGuu--CC---CG- -5'
18410 5' -63.9 NC_004681.1 + 63431 0.7 0.206972
Target:  5'- uUCCCUGGCcaccaGGCUUCCAGCCUc--GGCc -3'
miRNA:   3'- -AGGGACCG-----CUGGGGGUCGGGuucCCG- -5'
18410 5' -63.9 NC_004681.1 + 40754 0.7 0.217388
Target:  5'- aUUgCUGGCGAucccucuuaUCCCCAGCgCCGAGGa- -3'
miRNA:   3'- -AGgGACCGCU---------GGGGGUCG-GGUUCCcg -5'
18410 5' -63.9 NC_004681.1 + 39218 0.69 0.224944
Target:  5'- -gCCUGGuCGACUgUCAGCUCAccgugcgccgcggcaAGGGCg -3'
miRNA:   3'- agGGACC-GCUGGgGGUCGGGU---------------UCCCG- -5'
18410 5' -63.9 NC_004681.1 + 48676 0.69 0.22825
Target:  5'- aCCCUGGCGGgCCagcuCCCAuGGGCc -3'
miRNA:   3'- aGGGACCGCUgGGggucGGGUuCCCG- -5'
18410 5' -63.9 NC_004681.1 + 7125 0.69 0.233285
Target:  5'- cCCCUccaaccgggaugcGGUGAUCCUgCAGUCCAAGGcGCu -3'
miRNA:   3'- aGGGA-------------CCGCUGGGG-GUCGGGUUCC-CG- -5'
18410 5' -63.9 NC_004681.1 + 18104 0.69 0.245399
Target:  5'- cCCCggcaucGGCG-CCCCCGGCCa---GGCa -3'
miRNA:   3'- aGGGa-----CCGCuGGGGGUCGGguucCCG- -5'
18410 5' -63.9 NC_004681.1 + 66793 0.69 0.257417
Target:  5'- cUCCCUGG--ACCCCgAGUacgCCAAGGcGCu -3'
miRNA:   3'- -AGGGACCgcUGGGGgUCG---GGUUCC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.