miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18410 5' -63.9 NC_004681.1 + 32535 0.67 0.33219
Target:  5'- gUUCCUGGUGGCCgCUGgcaucuucgacGCCCugaaGGGGGCc -3'
miRNA:   3'- -AGGGACCGCUGGgGGU-----------CGGG----UUCCCG- -5'
18410 5' -63.9 NC_004681.1 + 66943 0.67 0.33219
Target:  5'- gCCCUGGUGccgcGCgCCgAGCUCGAaGGCg -3'
miRNA:   3'- aGGGACCGC----UGgGGgUCGGGUUcCCG- -5'
18410 5' -63.9 NC_004681.1 + 10225 0.67 0.317486
Target:  5'- gCCCUGGC--UCCCCGGUUCGcugcGGGUg -3'
miRNA:   3'- aGGGACCGcuGGGGGUCGGGUu---CCCG- -5'
18410 5' -63.9 NC_004681.1 + 69130 0.67 0.31032
Target:  5'- gCCCUGGCcuCCCUC-GCCUAccGGCu -3'
miRNA:   3'- aGGGACCGcuGGGGGuCGGGUucCCG- -5'
18410 5' -63.9 NC_004681.1 + 39094 0.68 0.296359
Target:  5'- gCCCUGGUGGCCaCCuGCgC--GGGCa -3'
miRNA:   3'- aGGGACCGCUGGgGGuCGgGuuCCCG- -5'
18410 5' -63.9 NC_004681.1 + 64814 0.68 0.296359
Target:  5'- uUCCaggugGGCgGACCCaCCAGCgUCAuGGGGCc -3'
miRNA:   3'- -AGGga---CCG-CUGGG-GGUCG-GGU-UCCCG- -5'
18410 5' -63.9 NC_004681.1 + 48005 0.68 0.295674
Target:  5'- cUCCUGGauuagcgaCGugcagaugguugaGCCCCCcGCCUggGGGCu -3'
miRNA:   3'- aGGGACC--------GC-------------UGGGGGuCGGGuuCCCG- -5'
18410 5' -63.9 NC_004681.1 + 23561 0.68 0.289563
Target:  5'- gUCUCUGGCacaguguUCgUCAGCCaCGAGGGCu -3'
miRNA:   3'- -AGGGACCGcu-----GGgGGUCGG-GUUCCCG- -5'
18410 5' -63.9 NC_004681.1 + 40205 0.68 0.282891
Target:  5'- -aCCUGGCGACCCCC------GGGGUg -3'
miRNA:   3'- agGGACCGCUGGGGGucggguUCCCG- -5'
18410 5' -63.9 NC_004681.1 + 48326 0.68 0.282891
Target:  5'- --aCUGGCGAgCCUCGGC--GAGGGCc -3'
miRNA:   3'- aggGACCGCUgGGGGUCGggUUCCCG- -5'
18410 5' -63.9 NC_004681.1 + 23556 0.68 0.28223
Target:  5'- aCCUUGGCGGCgCCCGaCCCAucagaacugcgggAGuGGCc -3'
miRNA:   3'- aGGGACCGCUGgGGGUcGGGU-------------UC-CCG- -5'
18410 5' -63.9 NC_004681.1 + 26737 0.68 0.27634
Target:  5'- gCCCcGGCcaaCCUCGGCUaCAAGGGCg -3'
miRNA:   3'- aGGGaCCGcugGGGGUCGG-GUUCCCG- -5'
18410 5' -63.9 NC_004681.1 + 28591 0.68 0.27634
Target:  5'- gCCCggGGUGAgUgugagCCCAGCCCc-GGGCg -3'
miRNA:   3'- aGGGa-CCGCUgG-----GGGUCGGGuuCCCG- -5'
18410 5' -63.9 NC_004681.1 + 5300 0.68 0.269912
Target:  5'- aUCUgUGGCGACagCUCGGCCauggcGGGCg -3'
miRNA:   3'- -AGGgACCGCUGg-GGGUCGGguu--CCCG- -5'
18410 5' -63.9 NC_004681.1 + 45509 0.68 0.269912
Target:  5'- ----cGGCGACCCCUAcuaCAAGGGCg -3'
miRNA:   3'- agggaCCGCUGGGGGUcggGUUCCCG- -5'
18410 5' -63.9 NC_004681.1 + 2893 0.68 0.263604
Target:  5'- cUCCCgcuCGACCCCUAcauCCUggGGGCc -3'
miRNA:   3'- -AGGGaccGCUGGGGGUc--GGGuuCCCG- -5'
18410 5' -63.9 NC_004681.1 + 66793 0.69 0.257417
Target:  5'- cUCCCUGG--ACCCCgAGUacgCCAAGGcGCu -3'
miRNA:   3'- -AGGGACCgcUGGGGgUCG---GGUUCC-CG- -5'
18410 5' -63.9 NC_004681.1 + 18104 0.69 0.245399
Target:  5'- cCCCggcaucGGCG-CCCCCGGCCa---GGCa -3'
miRNA:   3'- aGGGa-----CCGCuGGGGGUCGGguucCCG- -5'
18410 5' -63.9 NC_004681.1 + 7125 0.69 0.233285
Target:  5'- cCCCUccaaccgggaugcGGUGAUCCUgCAGUCCAAGGcGCu -3'
miRNA:   3'- aGGGA-------------CCGCUGGGG-GUCGGGUUCC-CG- -5'
18410 5' -63.9 NC_004681.1 + 48676 0.69 0.22825
Target:  5'- aCCCUGGCGGgCCagcuCCCAuGGGCc -3'
miRNA:   3'- aGGGACCGCUgGGggucGGGUuCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.