miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18410 5' -63.9 NC_004681.1 + 1533 0.78 0.053371
Target:  5'- cCCCUGGUGACCgggCCAGCCUucagcuGGGCg -3'
miRNA:   3'- aGGGACCGCUGGg--GGUCGGGuu----CCCG- -5'
18410 5' -63.9 NC_004681.1 + 2893 0.68 0.263604
Target:  5'- cUCCCgcuCGACCCCUAcauCCUggGGGCc -3'
miRNA:   3'- -AGGGaccGCUGGGGGUc--GGGuuCCCG- -5'
18410 5' -63.9 NC_004681.1 + 3036 0.66 0.363076
Target:  5'- gCCC--GC-ACCCgCGGCgCCAAGGGCc -3'
miRNA:   3'- aGGGacCGcUGGGgGUCG-GGUUCCCG- -5'
18410 5' -63.9 NC_004681.1 + 5300 0.68 0.269912
Target:  5'- aUCUgUGGCGACagCUCGGCCauggcGGGCg -3'
miRNA:   3'- -AGGgACCGCUGg-GGGUCGGguu--CCCG- -5'
18410 5' -63.9 NC_004681.1 + 5811 0.67 0.33219
Target:  5'- cUCCaUGaGCGACaggccgcgCUCCAGCCCGucAGGGUu -3'
miRNA:   3'- -AGGgAC-CGCUG--------GGGGUCGGGU--UCCCG- -5'
18410 5' -63.9 NC_004681.1 + 7125 0.69 0.233285
Target:  5'- cCCCUccaaccgggaugcGGUGAUCCUgCAGUCCAAGGcGCu -3'
miRNA:   3'- aGGGA-------------CCGCUGGGG-GUCGGGUUCC-CG- -5'
18410 5' -63.9 NC_004681.1 + 7638 0.72 0.141867
Target:  5'- cUCCCUcaugGGgGACCCCCGGCCCGu---- -3'
miRNA:   3'- -AGGGA----CCgCUGGGGGUCGGGUucccg -5'
18410 5' -63.9 NC_004681.1 + 8387 0.66 0.371102
Target:  5'- gUCCUUGGCGGCgUCCGcGCCaccGaGGCu -3'
miRNA:   3'- -AGGGACCGCUGgGGGU-CGGguuC-CCG- -5'
18410 5' -63.9 NC_004681.1 + 10225 0.67 0.317486
Target:  5'- gCCCUGGC--UCCCCGGUUCGcugcGGGUg -3'
miRNA:   3'- aGGGACCGcuGGGGGUCGGGUu---CCCG- -5'
18410 5' -63.9 NC_004681.1 + 10655 0.71 0.173858
Target:  5'- -gCCUGGCG-CCCCCGguGCCCGc-GGCc -3'
miRNA:   3'- agGGACCGCuGGGGGU--CGGGUucCCG- -5'
18410 5' -63.9 NC_004681.1 + 12208 0.67 0.339727
Target:  5'- uUCCCcGcGCGccgcAUCCCCgguGGCCCGuucuGGGCu -3'
miRNA:   3'- -AGGGaC-CGC----UGGGGG---UCGGGUu---CCCG- -5'
18410 5' -63.9 NC_004681.1 + 12338 0.66 0.379249
Target:  5'- -aCCgGGCcACCCgacUCAGCCCAGaacGGGCc -3'
miRNA:   3'- agGGaCCGcUGGG---GGUCGGGUU---CCCG- -5'
18410 5' -63.9 NC_004681.1 + 14785 0.75 0.090837
Target:  5'- gCCCUGGCcauccugaaggcuGGCgCCCAGCuggcccguaCCGAGGGCg -3'
miRNA:   3'- aGGGACCG-------------CUGgGGGUCG---------GGUUCCCG- -5'
18410 5' -63.9 NC_004681.1 + 15563 0.67 0.339727
Target:  5'- cUUCUGGUGcaucGCaUCCCAGUCCuuGAGGGCu -3'
miRNA:   3'- aGGGACCGC----UG-GGGGUCGGG--UUCCCG- -5'
18410 5' -63.9 NC_004681.1 + 16786 0.72 0.141867
Target:  5'- -gCCUGGCGGCauCCCCGgcauGCCCGAGGa- -3'
miRNA:   3'- agGGACCGCUG--GGGGU----CGGGUUCCcg -5'
18410 5' -63.9 NC_004681.1 + 17548 0.75 0.091077
Target:  5'- cUCCCUGGCGGCaCCCCcuUCaacuGGGGCa -3'
miRNA:   3'- -AGGGACCGCUG-GGGGucGGgu--UCCCG- -5'
18410 5' -63.9 NC_004681.1 + 18104 0.69 0.245399
Target:  5'- cCCCggcaucGGCG-CCCCCGGCCa---GGCa -3'
miRNA:   3'- aGGGa-----CCGCuGGGGGUCGGguucCCG- -5'
18410 5' -63.9 NC_004681.1 + 18205 0.72 0.14932
Target:  5'- cUCCC-GGCGcACCCCCGGguguaCCGGgcGGGCa -3'
miRNA:   3'- -AGGGaCCGC-UGGGGGUCg----GGUU--CCCG- -5'
18410 5' -63.9 NC_004681.1 + 18547 0.7 0.201927
Target:  5'- gCCCgguUGGCGACCUCCAuGCCCuucuGGacaGCg -3'
miRNA:   3'- aGGG---ACCGCUGGGGGU-CGGGuu--CC---CG- -5'
18410 5' -63.9 NC_004681.1 + 19364 0.66 0.347388
Target:  5'- -aCCgGGuCGACCacaCCGGCCU--GGGCg -3'
miRNA:   3'- agGGaCC-GCUGGg--GGUCGGGuuCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.