miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18410 5' -63.9 NC_004681.1 + 21271 1.1 0.000208
Target:  5'- cUCCCUGGCGACCCCCAGCCCAAGGGCc -3'
miRNA:   3'- -AGGGACCGCUGGGGGUCGGGUUCCCG- -5'
18410 5' -63.9 NC_004681.1 + 22673 0.74 0.115348
Target:  5'- aUCCCcGGC-ACCgaCCAGCCCAAGGaGUg -3'
miRNA:   3'- -AGGGaCCGcUGGg-GGUCGGGUUCC-CG- -5'
18410 5' -63.9 NC_004681.1 + 23556 0.68 0.28223
Target:  5'- aCCUUGGCGGCgCCCGaCCCAucagaacugcgggAGuGGCc -3'
miRNA:   3'- aGGGACCGCUGgGGGUcGGGU-------------UC-CCG- -5'
18410 5' -63.9 NC_004681.1 + 23561 0.68 0.289563
Target:  5'- gUCUCUGGCacaguguUCgUCAGCCaCGAGGGCu -3'
miRNA:   3'- -AGGGACCGcu-----GGgGGUCGG-GUUCCCG- -5'
18410 5' -63.9 NC_004681.1 + 24784 0.66 0.347388
Target:  5'- cUCgCUGGCGccacggaaAUUCCCAuGCCCGcauGGGCc -3'
miRNA:   3'- -AGgGACCGC--------UGGGGGU-CGGGUu--CCCG- -5'
18410 5' -63.9 NC_004681.1 + 25590 0.66 0.347388
Target:  5'- cCCgCUGaGCGACCaaCCCAGuCCCAcguuucugcgauGGGGa -3'
miRNA:   3'- aGG-GAC-CGCUGG--GGGUC-GGGU------------UCCCg -5'
18410 5' -63.9 NC_004681.1 + 26737 0.68 0.27634
Target:  5'- gCCCcGGCcaaCCUCGGCUaCAAGGGCg -3'
miRNA:   3'- aGGGaCCGcugGGGGUCGG-GUUCCCG- -5'
18410 5' -63.9 NC_004681.1 + 27598 0.71 0.169532
Target:  5'- aUCUgaGGCGugCCCCAGgUCAGGGucaGCg -3'
miRNA:   3'- -AGGgaCCGCugGGGGUCgGGUUCC---CG- -5'
18410 5' -63.9 NC_004681.1 + 28404 0.66 0.358318
Target:  5'- -gCCUGGCGGuCaCCCCGGCUCccgcgGagauggagcucgcguGGGGCa -3'
miRNA:   3'- agGGACCGCU-G-GGGGUCGGG-----U---------------UCCCG- -5'
18410 5' -63.9 NC_004681.1 + 28497 0.66 0.363076
Target:  5'- gCCggGGUGACCgCCAGgCCAuugacuGGGGUu -3'
miRNA:   3'- aGGgaCCGCUGGgGGUCgGGU------UCCCG- -5'
18410 5' -63.9 NC_004681.1 + 28591 0.68 0.27634
Target:  5'- gCCCggGGUGAgUgugagCCCAGCCCc-GGGCg -3'
miRNA:   3'- aGGGa-CCGCUgG-----GGGUCGGGuuCCCG- -5'
18410 5' -63.9 NC_004681.1 + 29528 0.66 0.347388
Target:  5'- aCCCggugUGGaCGGCUUCCGGCUC--GGGCa -3'
miRNA:   3'- aGGG----ACC-GCUGGGGGUCGGGuuCCCG- -5'
18410 5' -63.9 NC_004681.1 + 30441 0.66 0.355171
Target:  5'- uUCCCccaauGCGaaaGCCCCCgAGCCgaaacuCAGGGGCc -3'
miRNA:   3'- -AGGGac---CGC---UGGGGG-UCGG------GUUCCCG- -5'
18410 5' -63.9 NC_004681.1 + 32295 0.76 0.08192
Target:  5'- gCUCaacGGCGACCCCCAGCCUu--GGCg -3'
miRNA:   3'- aGGGa--CCGCUGGGGGUCGGGuucCCG- -5'
18410 5' -63.9 NC_004681.1 + 32535 0.67 0.33219
Target:  5'- gUUCCUGGUGGCCgCUGgcaucuucgacGCCCugaaGGGGGCc -3'
miRNA:   3'- -AGGGACCGCUGGgGGU-----------CGGG----UUCCCG- -5'
18410 5' -63.9 NC_004681.1 + 38140 0.66 0.395898
Target:  5'- cCCCgaGGCcggauGGCCCUCGGCCUAcguuGGCg -3'
miRNA:   3'- aGGGa-CCG-----CUGGGGGUCGGGUuc--CCG- -5'
18410 5' -63.9 NC_004681.1 + 39094 0.68 0.296359
Target:  5'- gCCCUGGUGGCCaCCuGCgC--GGGCa -3'
miRNA:   3'- aGGGACCGCUGGgGGuCGgGuuCCCG- -5'
18410 5' -63.9 NC_004681.1 + 39218 0.69 0.224944
Target:  5'- -gCCUGGuCGACUgUCAGCUCAccgugcgccgcggcaAGGGCg -3'
miRNA:   3'- agGGACC-GCUGGgGGUCGGGU---------------UCCCG- -5'
18410 5' -63.9 NC_004681.1 + 40205 0.68 0.282891
Target:  5'- -aCCUGGCGACCCCC------GGGGUg -3'
miRNA:   3'- agGGACCGCUGGGGGucggguUCCCG- -5'
18410 5' -63.9 NC_004681.1 + 40754 0.7 0.217388
Target:  5'- aUUgCUGGCGAucccucuuaUCCCCAGCgCCGAGGa- -3'
miRNA:   3'- -AGgGACCGCU---------GGGGGUCG-GGUUCCcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.