miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18410 5' -63.9 NC_004681.1 + 69130 0.67 0.31032
Target:  5'- gCCCUGGCcuCCCUC-GCCUAccGGCu -3'
miRNA:   3'- aGGGACCGcuGGGGGuCGGGUucCCG- -5'
18410 5' -63.9 NC_004681.1 + 66943 0.67 0.33219
Target:  5'- gCCCUGGUGccgcGCgCCgAGCUCGAaGGCg -3'
miRNA:   3'- aGGGACCGC----UGgGGgUCGGGUUcCCG- -5'
18410 5' -63.9 NC_004681.1 + 66793 0.69 0.257417
Target:  5'- cUCCCUGG--ACCCCgAGUacgCCAAGGcGCu -3'
miRNA:   3'- -AGGGACCgcUGGGGgUCG---GGUUCC-CG- -5'
18410 5' -63.9 NC_004681.1 + 64814 0.68 0.296359
Target:  5'- uUCCaggugGGCgGACCCaCCAGCgUCAuGGGGCc -3'
miRNA:   3'- -AGGga---CCG-CUGGG-GGUCG-GGU-UCCCG- -5'
18410 5' -63.9 NC_004681.1 + 63431 0.7 0.206972
Target:  5'- uUCCCUGGCcaccaGGCUUCCAGCCUc--GGCc -3'
miRNA:   3'- -AGGGACCG-----CUGGGGGUCGGGuucCCG- -5'
18410 5' -63.9 NC_004681.1 + 49548 0.74 0.109194
Target:  5'- gCCCUGGCcuuCCCCCgcgggcaGGCCCGAGG-Ca -3'
miRNA:   3'- aGGGACCGcu-GGGGG-------UCGGGUUCCcG- -5'
18410 5' -63.9 NC_004681.1 + 48676 0.69 0.22825
Target:  5'- aCCCUGGCGGgCCagcuCCCAuGGGCc -3'
miRNA:   3'- aGGGACCGCUgGGggucGGGUuCCCG- -5'
18410 5' -63.9 NC_004681.1 + 48326 0.68 0.282891
Target:  5'- --aCUGGCGAgCCUCGGC--GAGGGCc -3'
miRNA:   3'- aggGACCGCUgGGGGUCGggUUCCCG- -5'
18410 5' -63.9 NC_004681.1 + 48230 0.66 0.395898
Target:  5'- gCCCUcGCcgaGGCUCgCCAGUCCGAuacGGGCa -3'
miRNA:   3'- aGGGAcCG---CUGGG-GGUCGGGUU---CCCG- -5'
18410 5' -63.9 NC_004681.1 + 48005 0.68 0.295674
Target:  5'- cUCCUGGauuagcgaCGugcagaugguugaGCCCCCcGCCUggGGGCu -3'
miRNA:   3'- aGGGACC--------GC-------------UGGGGGuCGGGuuCCCG- -5'
18410 5' -63.9 NC_004681.1 + 45509 0.68 0.269912
Target:  5'- ----cGGCGACCCCUAcuaCAAGGGCg -3'
miRNA:   3'- agggaCCGCUGGGGGUcggGUUCCCG- -5'
18410 5' -63.9 NC_004681.1 + 45043 0.66 0.347388
Target:  5'- gCCCgagcucgcggUGGCGGCUCCaccGCgUggGGGCg -3'
miRNA:   3'- aGGG----------ACCGCUGGGGgu-CGgGuuCCCG- -5'
18410 5' -63.9 NC_004681.1 + 44982 0.66 0.355171
Target:  5'- gCCCUGcUGcAUCCUCGGCCUcguGGGCg -3'
miRNA:   3'- aGGGACcGC-UGGGGGUCGGGuu-CCCG- -5'
18410 5' -63.9 NC_004681.1 + 44631 0.66 0.361485
Target:  5'- cUCCUUGGgaaguaaggagaGACCCCCA--CCAAGGGa -3'
miRNA:   3'- -AGGGACCg-----------CUGGGGGUcgGGUUCCCg -5'
18410 5' -63.9 NC_004681.1 + 44339 0.66 0.382541
Target:  5'- cUCCUGGCGAcacacuccacuucguCCCCgAGaCCUGAcccuacGGGCg -3'
miRNA:   3'- aGGGACCGCU---------------GGGGgUC-GGGUU------CCCG- -5'
18410 5' -63.9 NC_004681.1 + 44237 0.66 0.355171
Target:  5'- -gCCggugagGGCcaGGCCCgCGGCCuCGGGGGUg -3'
miRNA:   3'- agGGa-----CCG--CUGGGgGUCGG-GUUCCCG- -5'
18410 5' -63.9 NC_004681.1 + 40754 0.7 0.217388
Target:  5'- aUUgCUGGCGAucccucuuaUCCCCAGCgCCGAGGa- -3'
miRNA:   3'- -AGgGACCGCU---------GGGGGUCG-GGUUCCcg -5'
18410 5' -63.9 NC_004681.1 + 40205 0.68 0.282891
Target:  5'- -aCCUGGCGACCCCC------GGGGUg -3'
miRNA:   3'- agGGACCGCUGGGGGucggguUCCCG- -5'
18410 5' -63.9 NC_004681.1 + 39218 0.69 0.224944
Target:  5'- -gCCUGGuCGACUgUCAGCUCAccgugcgccgcggcaAGGGCg -3'
miRNA:   3'- agGGACC-GCUGGgGGUCGGGU---------------UCCCG- -5'
18410 5' -63.9 NC_004681.1 + 39094 0.68 0.296359
Target:  5'- gCCCUGGUGGCCaCCuGCgC--GGGCa -3'
miRNA:   3'- aGGGACCGCUGGgGGuCGgGuuCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.