Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18410 | 5' | -63.9 | NC_004681.1 | + | 27598 | 0.71 | 0.169532 |
Target: 5'- aUCUgaGGCGugCCCCAGgUCAGGGucaGCg -3' miRNA: 3'- -AGGgaCCGCugGGGGUCgGGUUCC---CG- -5' |
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18410 | 5' | -63.9 | NC_004681.1 | + | 25590 | 0.66 | 0.347388 |
Target: 5'- cCCgCUGaGCGACCaaCCCAGuCCCAcguuucugcgauGGGGa -3' miRNA: 3'- aGG-GAC-CGCUGG--GGGUC-GGGU------------UCCCg -5' |
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18410 | 5' | -63.9 | NC_004681.1 | + | 5811 | 0.67 | 0.33219 |
Target: 5'- cUCCaUGaGCGACaggccgcgCUCCAGCCCGucAGGGUu -3' miRNA: 3'- -AGGgAC-CGCUG--------GGGGUCGGGU--UCCCG- -5' |
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18410 | 5' | -63.9 | NC_004681.1 | + | 64814 | 0.68 | 0.296359 |
Target: 5'- uUCCaggugGGCgGACCCaCCAGCgUCAuGGGGCc -3' miRNA: 3'- -AGGga---CCG-CUGGG-GGUCG-GGU-UCCCG- -5' |
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18410 | 5' | -63.9 | NC_004681.1 | + | 48326 | 0.68 | 0.282891 |
Target: 5'- --aCUGGCGAgCCUCGGC--GAGGGCc -3' miRNA: 3'- aggGACCGCUgGGGGUCGggUUCCCG- -5' |
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18410 | 5' | -63.9 | NC_004681.1 | + | 23556 | 0.68 | 0.28223 |
Target: 5'- aCCUUGGCGGCgCCCGaCCCAucagaacugcgggAGuGGCc -3' miRNA: 3'- aGGGACCGCUGgGGGUcGGGU-------------UC-CCG- -5' |
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18410 | 5' | -63.9 | NC_004681.1 | + | 12338 | 0.66 | 0.379249 |
Target: 5'- -aCCgGGCcACCCgacUCAGCCCAGaacGGGCc -3' miRNA: 3'- agGGaCCGcUGGG---GGUCGGGUU---CCCG- -5' |
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18410 | 5' | -63.9 | NC_004681.1 | + | 8387 | 0.66 | 0.371102 |
Target: 5'- gUCCUUGGCGGCgUCCGcGCCaccGaGGCu -3' miRNA: 3'- -AGGGACCGCUGgGGGU-CGGguuC-CCG- -5' |
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18410 | 5' | -63.9 | NC_004681.1 | + | 30441 | 0.66 | 0.355171 |
Target: 5'- uUCCCccaauGCGaaaGCCCCCgAGCCgaaacuCAGGGGCc -3' miRNA: 3'- -AGGGac---CGC---UGGGGG-UCGG------GUUCCCG- -5' |
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18410 | 5' | -63.9 | NC_004681.1 | + | 45043 | 0.66 | 0.347388 |
Target: 5'- gCCCgagcucgcggUGGCGGCUCCaccGCgUggGGGCg -3' miRNA: 3'- aGGG----------ACCGCUGGGGgu-CGgGuuCCCG- -5' |
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18410 | 5' | -63.9 | NC_004681.1 | + | 40205 | 0.68 | 0.282891 |
Target: 5'- -aCCUGGCGACCCCC------GGGGUg -3' miRNA: 3'- agGGACCGCUGGGGGucggguUCCCG- -5' |
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18410 | 5' | -63.9 | NC_004681.1 | + | 18547 | 0.7 | 0.201927 |
Target: 5'- gCCCgguUGGCGACCUCCAuGCCCuucuGGacaGCg -3' miRNA: 3'- aGGG---ACCGCUGGGGGU-CGGGuu--CC---CG- -5' |
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18410 | 5' | -63.9 | NC_004681.1 | + | 44631 | 0.66 | 0.361485 |
Target: 5'- cUCCUUGGgaaguaaggagaGACCCCCA--CCAAGGGa -3' miRNA: 3'- -AGGGACCg-----------CUGGGGGUcgGGUUCCCg -5' |
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18410 | 5' | -63.9 | NC_004681.1 | + | 5300 | 0.68 | 0.269912 |
Target: 5'- aUCUgUGGCGACagCUCGGCCauggcGGGCg -3' miRNA: 3'- -AGGgACCGCUGg-GGGUCGGguu--CCCG- -5' |
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18410 | 5' | -63.9 | NC_004681.1 | + | 15563 | 0.67 | 0.339727 |
Target: 5'- cUUCUGGUGcaucGCaUCCCAGUCCuuGAGGGCu -3' miRNA: 3'- aGGGACCGC----UG-GGGGUCGGG--UUCCCG- -5' |
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18410 | 5' | -63.9 | NC_004681.1 | + | 28497 | 0.66 | 0.363076 |
Target: 5'- gCCggGGUGACCgCCAGgCCAuugacuGGGGUu -3' miRNA: 3'- aGGgaCCGCUGGgGGUCgGGU------UCCCG- -5' |
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18410 | 5' | -63.9 | NC_004681.1 | + | 38140 | 0.66 | 0.395898 |
Target: 5'- cCCCgaGGCcggauGGCCCUCGGCCUAcguuGGCg -3' miRNA: 3'- aGGGa-CCG-----CUGGGGGUCGGGUuc--CCG- -5' |
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18410 | 5' | -63.9 | NC_004681.1 | + | 28591 | 0.68 | 0.27634 |
Target: 5'- gCCCggGGUGAgUgugagCCCAGCCCc-GGGCg -3' miRNA: 3'- aGGGa-CCGCUgG-----GGGUCGGGuuCCCG- -5' |
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18410 | 5' | -63.9 | NC_004681.1 | + | 44237 | 0.66 | 0.355171 |
Target: 5'- -gCCggugagGGCcaGGCCCgCGGCCuCGGGGGUg -3' miRNA: 3'- agGGa-----CCG--CUGGGgGUCGG-GUUCCCG- -5' |
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18410 | 5' | -63.9 | NC_004681.1 | + | 48676 | 0.69 | 0.22825 |
Target: 5'- aCCCUGGCGGgCCagcuCCCAuGGGCc -3' miRNA: 3'- aGGGACCGCUgGGggucGGGUuCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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