miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18411 5' -58.9 NC_004681.1 + 25017 0.66 0.628764
Target:  5'- gACgCCGCGCagaagGGUGGCagcugcccaCUUGCCGGggUCg -3'
miRNA:   3'- -UG-GGCGCG-----CCACCG---------GAGUGGCUuaAG- -5'
18411 5' -58.9 NC_004681.1 + 54353 0.66 0.611908
Target:  5'- uACCUGCGCaaguGGgcacGCCUCGCCacccagcugggugugGAGUUCg -3'
miRNA:   3'- -UGGGCGCG----CCac--CGGAGUGG---------------CUUAAG- -5'
18411 5' -58.9 NC_004681.1 + 39959 0.66 0.6077
Target:  5'- gAUCCGCGCGcGUcGGCgccgggucaaCUCACCGGc--- -3'
miRNA:   3'- -UGGGCGCGC-CA-CCG----------GAGUGGCUuaag -5'
18411 5' -58.9 NC_004681.1 + 44132 0.67 0.555512
Target:  5'- cCCCGaggcCGCGGgccUGGcCCUCACCGGc--- -3'
miRNA:   3'- uGGGC----GCGCC---ACC-GGAGUGGCUuaag -5'
18411 5' -58.9 NC_004681.1 + 12615 0.67 0.555512
Target:  5'- aGCCUGCGacuCGGcGGUCUCGCCGu---- -3'
miRNA:   3'- -UGGGCGC---GCCaCCGGAGUGGCuuaag -5'
18411 5' -58.9 NC_004681.1 + 56202 0.67 0.545214
Target:  5'- uGCCCcuugaGuCGGUGGCCUgGaCCGGcgUCg -3'
miRNA:   3'- -UGGGcg---C-GCCACCGGAgU-GGCUuaAG- -5'
18411 5' -58.9 NC_004681.1 + 6366 0.67 0.545214
Target:  5'- gGCCCucguuCGgGGUGGCgaCACCGGAg-- -3'
miRNA:   3'- -UGGGc----GCgCCACCGgaGUGGCUUaag -5'
18411 5' -58.9 NC_004681.1 + 49645 0.67 0.534979
Target:  5'- uGCCCGCGgGGgaaGGCCagGgCGAugUCg -3'
miRNA:   3'- -UGGGCGCgCCa--CCGGagUgGCUuaAG- -5'
18411 5' -58.9 NC_004681.1 + 19197 0.67 0.534979
Target:  5'- aACCuCGCGCcggguguccugGGUGGUgaCGCCGGAUg- -3'
miRNA:   3'- -UGG-GCGCG-----------CCACCGgaGUGGCUUAag -5'
18411 5' -58.9 NC_004681.1 + 8614 0.67 0.534979
Target:  5'- -gCCGCGgGGgcGGUCUCACCGuccgCg -3'
miRNA:   3'- ugGGCGCgCCa-CCGGAGUGGCuuaaG- -5'
18411 5' -58.9 NC_004681.1 + 20028 0.67 0.52887
Target:  5'- cACCUGCguguugagcaggcccGCGGUGGCCUUcauGCCGu---- -3'
miRNA:   3'- -UGGGCG---------------CGCCACCGGAG---UGGCuuaag -5'
18411 5' -58.9 NC_004681.1 + 45044 0.67 0.524813
Target:  5'- aGCCCGagcuCGCGGUGGCggCUcCACCGcGUg- -3'
miRNA:   3'- -UGGGC----GCGCCACCG--GA-GUGGCuUAag -5'
18411 5' -58.9 NC_004681.1 + 29410 0.67 0.51472
Target:  5'- -aCCGCGUGGUcuGGCgUCACUGGc--- -3'
miRNA:   3'- ugGGCGCGCCA--CCGgAGUGGCUuaag -5'
18411 5' -58.9 NC_004681.1 + 40006 0.68 0.504707
Target:  5'- uCCUGCGCaGGcUGGCCgcgCGCUGGGggUCu -3'
miRNA:   3'- uGGGCGCG-CC-ACCGGa--GUGGCUUa-AG- -5'
18411 5' -58.9 NC_004681.1 + 12256 0.68 0.504707
Target:  5'- gGCCCgGUGCuGUGGCCgacUC-CCGAggUCg -3'
miRNA:   3'- -UGGG-CGCGcCACCGG---AGuGGCUuaAG- -5'
18411 5' -58.9 NC_004681.1 + 51837 0.68 0.484942
Target:  5'- uGCCCGCGcCGGggcGGCCgccgacgacCACCaGGUUCc -3'
miRNA:   3'- -UGGGCGC-GCCa--CCGGa--------GUGGcUUAAG- -5'
18411 5' -58.9 NC_004681.1 + 60692 0.68 0.455062
Target:  5'- -gCCGCaGCGGcGGCCUCGUCGAgcaccacGUUCg -3'
miRNA:   3'- ugGGCG-CGCCaCCGGAGUGGCU-------UAAG- -5'
18411 5' -58.9 NC_004681.1 + 69123 0.69 0.437248
Target:  5'- cGCCCGCGCccUGGCCUCccucgccuACCGGc--- -3'
miRNA:   3'- -UGGGCGCGccACCGGAG--------UGGCUuaag -5'
18411 5' -58.9 NC_004681.1 + 36956 0.69 0.437248
Target:  5'- cUCCaCGCGGcGGCCgUCACCGGAa-- -3'
miRNA:   3'- uGGGcGCGCCaCCGG-AGUGGCUUaag -5'
18411 5' -58.9 NC_004681.1 + 61671 0.69 0.418938
Target:  5'- -gCCGcCGCGGaGGCCgcCGCCGAggUCu -3'
miRNA:   3'- ugGGC-GCGCCaCCGGa-GUGGCUuaAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.