miRNA display CGI


Results 21 - 30 of 30 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18411 5' -58.9 NC_004681.1 + 24809 0.69 0.409958
Target:  5'- uGCCCGCaugggccaacGCGGUcGaCCUCAUCGGcgUCg -3'
miRNA:   3'- -UGGGCG----------CGCCAcC-GGAGUGGCUuaAG- -5'
18411 5' -58.9 NC_004681.1 + 18850 0.69 0.401101
Target:  5'- gUgCGUGCGGUgucacgcgcGGCCUCGCCGccgUCg -3'
miRNA:   3'- uGgGCGCGCCA---------CCGGAGUGGCuuaAG- -5'
18411 5' -58.9 NC_004681.1 + 45071 0.7 0.392365
Target:  5'- cAUCCGcCGCGGUcgaGGcCCUCGCCGcggUCu -3'
miRNA:   3'- -UGGGC-GCGCCA---CC-GGAGUGGCuuaAG- -5'
18411 5' -58.9 NC_004681.1 + 47035 0.7 0.375269
Target:  5'- cGCCCGaGuCGGcGGCCUCACCGu---- -3'
miRNA:   3'- -UGGGCgC-GCCaCCGGAGUGGCuuaag -5'
18411 5' -58.9 NC_004681.1 + 39193 0.7 0.350587
Target:  5'- uGCCCGCGCaGGUGGCC--ACCa----- -3'
miRNA:   3'- -UGGGCGCG-CCACCGGagUGGcuuaag -5'
18411 5' -58.9 NC_004681.1 + 32511 0.71 0.334784
Target:  5'- cGCCUGCGCGGUGGUgccuucguagugCUUGCCguugugguccGAGUUCc -3'
miRNA:   3'- -UGGGCGCGCCACCG------------GAGUGG----------CUUAAG- -5'
18411 5' -58.9 NC_004681.1 + 55275 0.71 0.334784
Target:  5'- uUCCGuCGCGGgcgauccaUGGCUUCGCCG-GUUCa -3'
miRNA:   3'- uGGGC-GCGCC--------ACCGGAGUGGCuUAAG- -5'
18411 5' -58.9 NC_004681.1 + 45584 0.71 0.330146
Target:  5'- cGCCCGCaaGGUGGCCggugccuccuccgcgUCggccaaggguACCGAGUUCc -3'
miRNA:   3'- -UGGGCGcgCCACCGG---------------AG----------UGGCUUAAG- -5'
18411 5' -58.9 NC_004681.1 + 24554 0.71 0.304761
Target:  5'- uGCCCGUG-GGUGGCUcgCACUGggUg- -3'
miRNA:   3'- -UGGGCGCgCCACCGGa-GUGGCuuAag -5'
18411 5' -58.9 NC_004681.1 + 21541 1.08 0.000812
Target:  5'- cACCCGCGCGGUGGCCUCACCGAAUUCc -3'
miRNA:   3'- -UGGGCGCGCCACCGGAGUGGCUUAAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.