miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18411 5' -58.9 NC_004681.1 + 6366 0.67 0.545214
Target:  5'- gGCCCucguuCGgGGUGGCgaCACCGGAg-- -3'
miRNA:   3'- -UGGGc----GCgCCACCGgaGUGGCUUaag -5'
18411 5' -58.9 NC_004681.1 + 8614 0.67 0.534979
Target:  5'- -gCCGCGgGGgcGGUCUCACCGuccgCg -3'
miRNA:   3'- ugGGCGCgCCa-CCGGAGUGGCuuaaG- -5'
18411 5' -58.9 NC_004681.1 + 12256 0.68 0.504707
Target:  5'- gGCCCgGUGCuGUGGCCgacUC-CCGAggUCg -3'
miRNA:   3'- -UGGG-CGCGcCACCGG---AGuGGCUuaAG- -5'
18411 5' -58.9 NC_004681.1 + 12615 0.67 0.555512
Target:  5'- aGCCUGCGacuCGGcGGUCUCGCCGu---- -3'
miRNA:   3'- -UGGGCGC---GCCaCCGGAGUGGCuuaag -5'
18411 5' -58.9 NC_004681.1 + 18850 0.69 0.401101
Target:  5'- gUgCGUGCGGUgucacgcgcGGCCUCGCCGccgUCg -3'
miRNA:   3'- uGgGCGCGCCA---------CCGGAGUGGCuuaAG- -5'
18411 5' -58.9 NC_004681.1 + 19197 0.67 0.534979
Target:  5'- aACCuCGCGCcggguguccugGGUGGUgaCGCCGGAUg- -3'
miRNA:   3'- -UGG-GCGCG-----------CCACCGgaGUGGCUUAag -5'
18411 5' -58.9 NC_004681.1 + 20028 0.67 0.52887
Target:  5'- cACCUGCguguugagcaggcccGCGGUGGCCUUcauGCCGu---- -3'
miRNA:   3'- -UGGGCG---------------CGCCACCGGAG---UGGCuuaag -5'
18411 5' -58.9 NC_004681.1 + 21541 1.08 0.000812
Target:  5'- cACCCGCGCGGUGGCCUCACCGAAUUCc -3'
miRNA:   3'- -UGGGCGCGCCACCGGAGUGGCUUAAG- -5'
18411 5' -58.9 NC_004681.1 + 24554 0.71 0.304761
Target:  5'- uGCCCGUG-GGUGGCUcgCACUGggUg- -3'
miRNA:   3'- -UGGGCGCgCCACCGGa-GUGGCuuAag -5'
18411 5' -58.9 NC_004681.1 + 24809 0.69 0.409958
Target:  5'- uGCCCGCaugggccaacGCGGUcGaCCUCAUCGGcgUCg -3'
miRNA:   3'- -UGGGCG----------CGCCAcC-GGAGUGGCUuaAG- -5'
18411 5' -58.9 NC_004681.1 + 25017 0.66 0.628764
Target:  5'- gACgCCGCGCagaagGGUGGCagcugcccaCUUGCCGGggUCg -3'
miRNA:   3'- -UG-GGCGCG-----CCACCG---------GAGUGGCUuaAG- -5'
18411 5' -58.9 NC_004681.1 + 29410 0.67 0.51472
Target:  5'- -aCCGCGUGGUcuGGCgUCACUGGc--- -3'
miRNA:   3'- ugGGCGCGCCA--CCGgAGUGGCUuaag -5'
18411 5' -58.9 NC_004681.1 + 32511 0.71 0.334784
Target:  5'- cGCCUGCGCGGUGGUgccuucguagugCUUGCCguugugguccGAGUUCc -3'
miRNA:   3'- -UGGGCGCGCCACCG------------GAGUGG----------CUUAAG- -5'
18411 5' -58.9 NC_004681.1 + 36956 0.69 0.437248
Target:  5'- cUCCaCGCGGcGGCCgUCACCGGAa-- -3'
miRNA:   3'- uGGGcGCGCCaCCGG-AGUGGCUUaag -5'
18411 5' -58.9 NC_004681.1 + 39193 0.7 0.350587
Target:  5'- uGCCCGCGCaGGUGGCC--ACCa----- -3'
miRNA:   3'- -UGGGCGCG-CCACCGGagUGGcuuaag -5'
18411 5' -58.9 NC_004681.1 + 39959 0.66 0.6077
Target:  5'- gAUCCGCGCGcGUcGGCgccgggucaaCUCACCGGc--- -3'
miRNA:   3'- -UGGGCGCGC-CA-CCG----------GAGUGGCUuaag -5'
18411 5' -58.9 NC_004681.1 + 40006 0.68 0.504707
Target:  5'- uCCUGCGCaGGcUGGCCgcgCGCUGGGggUCu -3'
miRNA:   3'- uGGGCGCG-CC-ACCGGa--GUGGCUUa-AG- -5'
18411 5' -58.9 NC_004681.1 + 44132 0.67 0.555512
Target:  5'- cCCCGaggcCGCGGgccUGGcCCUCACCGGc--- -3'
miRNA:   3'- uGGGC----GCGCC---ACC-GGAGUGGCUuaag -5'
18411 5' -58.9 NC_004681.1 + 45044 0.67 0.524813
Target:  5'- aGCCCGagcuCGCGGUGGCggCUcCACCGcGUg- -3'
miRNA:   3'- -UGGGC----GCGCCACCG--GA-GUGGCuUAag -5'
18411 5' -58.9 NC_004681.1 + 45071 0.7 0.392365
Target:  5'- cAUCCGcCGCGGUcgaGGcCCUCGCCGcggUCu -3'
miRNA:   3'- -UGGGC-GCGCCA---CC-GGAGUGGCuuaAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.