Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18411 | 5' | -58.9 | NC_004681.1 | + | 45044 | 0.67 | 0.524813 |
Target: 5'- aGCCCGagcuCGCGGUGGCggCUcCACCGcGUg- -3' miRNA: 3'- -UGGGC----GCGCCACCG--GA-GUGGCuUAag -5' |
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18411 | 5' | -58.9 | NC_004681.1 | + | 40006 | 0.68 | 0.504707 |
Target: 5'- uCCUGCGCaGGcUGGCCgcgCGCUGGGggUCu -3' miRNA: 3'- uGGGCGCG-CC-ACCGGa--GUGGCUUa-AG- -5' |
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18411 | 5' | -58.9 | NC_004681.1 | + | 51837 | 0.68 | 0.484942 |
Target: 5'- uGCCCGCGcCGGggcGGCCgccgacgacCACCaGGUUCc -3' miRNA: 3'- -UGGGCGC-GCCa--CCGGa--------GUGGcUUAAG- -5' |
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18411 | 5' | -58.9 | NC_004681.1 | + | 60692 | 0.68 | 0.455062 |
Target: 5'- -gCCGCaGCGGcGGCCUCGUCGAgcaccacGUUCg -3' miRNA: 3'- ugGGCG-CGCCaCCGGAGUGGCU-------UAAG- -5' |
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18411 | 5' | -58.9 | NC_004681.1 | + | 18850 | 0.69 | 0.401101 |
Target: 5'- gUgCGUGCGGUgucacgcgcGGCCUCGCCGccgUCg -3' miRNA: 3'- uGgGCGCGCCA---------CCGGAGUGGCuuaAG- -5' |
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18411 | 5' | -58.9 | NC_004681.1 | + | 47035 | 0.7 | 0.375269 |
Target: 5'- cGCCCGaGuCGGcGGCCUCACCGu---- -3' miRNA: 3'- -UGGGCgC-GCCaCCGGAGUGGCuuaag -5' |
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18411 | 5' | -58.9 | NC_004681.1 | + | 39193 | 0.7 | 0.350587 |
Target: 5'- uGCCCGCGCaGGUGGCC--ACCa----- -3' miRNA: 3'- -UGGGCGCG-CCACCGGagUGGcuuaag -5' |
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18411 | 5' | -58.9 | NC_004681.1 | + | 32511 | 0.71 | 0.334784 |
Target: 5'- cGCCUGCGCGGUGGUgccuucguagugCUUGCCguugugguccGAGUUCc -3' miRNA: 3'- -UGGGCGCGCCACCG------------GAGUGG----------CUUAAG- -5' |
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18411 | 5' | -58.9 | NC_004681.1 | + | 55275 | 0.71 | 0.334784 |
Target: 5'- uUCCGuCGCGGgcgauccaUGGCUUCGCCG-GUUCa -3' miRNA: 3'- uGGGC-GCGCC--------ACCGGAGUGGCuUAAG- -5' |
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18411 | 5' | -58.9 | NC_004681.1 | + | 25017 | 0.66 | 0.628764 |
Target: 5'- gACgCCGCGCagaagGGUGGCagcugcccaCUUGCCGGggUCg -3' miRNA: 3'- -UG-GGCGCG-----CCACCG---------GAGUGGCUuaAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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