miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18413 3' -52 NC_004681.1 + 52037 0.66 0.951904
Target:  5'- uGugGGUGUCGAGGuauuccUCGacgcgcucccacGUGGAGUUCu -3'
miRNA:   3'- gCugUCGCAGCUCC------AGC------------CACUUUAGG- -5'
18413 3' -52 NC_004681.1 + 26906 0.66 0.951904
Target:  5'- aCGuCAGCGUUGGccgccgCGGUGAAGUUg -3'
miRNA:   3'- -GCuGUCGCAGCUcca---GCCACUUUAGg -5'
18413 3' -52 NC_004681.1 + 23821 0.66 0.947476
Target:  5'- gGGCAGCGUCucGGaccCGGUcagcucGAAUCCg -3'
miRNA:   3'- gCUGUCGCAGcuCCa--GCCAc-----UUUAGG- -5'
18413 3' -52 NC_004681.1 + 45206 0.66 0.946096
Target:  5'- gCGACGGCGUCGGccccGGUcuugagcgagaccgCGGcGAGggCCu -3'
miRNA:   3'- -GCUGUCGCAGCU----CCA--------------GCCaCUUuaGG- -5'
18413 3' -52 NC_004681.1 + 9301 0.66 0.942786
Target:  5'- -cACAGCGuUCGGGGUCuGGaacagggucagcUGGAuGUCCa -3'
miRNA:   3'- gcUGUCGC-AGCUCCAG-CC------------ACUU-UAGG- -5'
18413 3' -52 NC_004681.1 + 23907 0.66 0.942786
Target:  5'- aCGACuuucGCGucaUCGAGGUagaaggugccugCGGUGGcuUCCu -3'
miRNA:   3'- -GCUGu---CGC---AGCUCCA------------GCCACUuuAGG- -5'
18413 3' -52 NC_004681.1 + 4913 0.66 0.942786
Target:  5'- uGGCAGCcauGUCGcGGUCGGguuuGUCa -3'
miRNA:   3'- gCUGUCG---CAGCuCCAGCCacuuUAGg -5'
18413 3' -52 NC_004681.1 + 47126 0.66 0.942786
Target:  5'- uCGuCGGgGUCGGGcucGUCGGUGggGa-- -3'
miRNA:   3'- -GCuGUCgCAGCUC---CAGCCACuuUagg -5'
18413 3' -52 NC_004681.1 + 12491 0.66 0.932613
Target:  5'- cCGACgAGCGUCGccG-CGGUGGuggugCCa -3'
miRNA:   3'- -GCUG-UCGCAGCucCaGCCACUuua--GG- -5'
18413 3' -52 NC_004681.1 + 29590 0.66 0.932613
Target:  5'- uGACAGCcacCGAGGUgguccCGGUGAGGg-- -3'
miRNA:   3'- gCUGUCGca-GCUCCA-----GCCACUUUagg -5'
18413 3' -52 NC_004681.1 + 40105 0.66 0.932613
Target:  5'- uGACugcaccccgGGgGUCGccAGGUCGGUGAccgCCc -3'
miRNA:   3'- gCUG---------UCgCAGC--UCCAGCCACUuuaGG- -5'
18413 3' -52 NC_004681.1 + 53909 0.67 0.927125
Target:  5'- uGGCgAGCaGgauggCGAGGUgGGUGAggAAUCUg -3'
miRNA:   3'- gCUG-UCG-Ca----GCUCCAgCCACU--UUAGG- -5'
18413 3' -52 NC_004681.1 + 19104 0.67 0.92137
Target:  5'- gGACacccGGCG-CGAGGUUcgcagcugGGUGGAcgCCu -3'
miRNA:   3'- gCUG----UCGCaGCUCCAG--------CCACUUuaGG- -5'
18413 3' -52 NC_004681.1 + 19157 0.67 0.92137
Target:  5'- uCGACAGUgaaGUCGAGcUCGGcggauucauagaUGGAGUCg -3'
miRNA:   3'- -GCUGUCG---CAGCUCcAGCC------------ACUUUAGg -5'
18413 3' -52 NC_004681.1 + 48787 0.67 0.92137
Target:  5'- aGugAGgcCGUCGAGGgcgCGgGUGAcAUCUg -3'
miRNA:   3'- gCugUC--GCAGCUCCa--GC-CACUuUAGG- -5'
18413 3' -52 NC_004681.1 + 50831 0.67 0.915347
Target:  5'- uCGAUGGUcaucccggGuUCGGGGUCGG-GGAGUUCg -3'
miRNA:   3'- -GCUGUCG--------C-AGCUCCAGCCaCUUUAGG- -5'
18413 3' -52 NC_004681.1 + 46823 0.67 0.915347
Target:  5'- uGACAGCGUCGAuGccgCGGaaguUGAAGUgCu -3'
miRNA:   3'- gCUGUCGCAGCUcCa--GCC----ACUUUAgG- -5'
18413 3' -52 NC_004681.1 + 7443 0.67 0.915347
Target:  5'- aGGCAGCGUCGAGGaUC--UGAccGA-CCg -3'
miRNA:   3'- gCUGUCGCAGCUCC-AGccACU--UUaGG- -5'
18413 3' -52 NC_004681.1 + 44665 0.67 0.915347
Target:  5'- gCGGCGGCGaUGAGGguuuucuucaUgGGUGAAucUCCu -3'
miRNA:   3'- -GCUGUCGCaGCUCC----------AgCCACUUu-AGG- -5'
18413 3' -52 NC_004681.1 + 61239 0.67 0.909057
Target:  5'- gCGGCGGCGuUCGuuGGacacgaCGGUGAAGUUg -3'
miRNA:   3'- -GCUGUCGC-AGCu-CCa-----GCCACUUUAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.