Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18413 | 3' | -52 | NC_004681.1 | + | 32014 | 0.67 | 0.902504 |
Target: 5'- uCGGCgccgcgGGUGUCGGcacGGcCGGUGuGAUCCu -3' miRNA: 3'- -GCUG------UCGCAGCU---CCaGCCACuUUAGG- -5' |
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18413 | 3' | -52 | NC_004681.1 | + | 34350 | 0.67 | 0.909057 |
Target: 5'- gCGGCGGCGU-GAGGguugugCGcGcugcgGAAAUCCa -3' miRNA: 3'- -GCUGUCGCAgCUCCa-----GC-Ca----CUUUAGG- -5' |
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18413 | 3' | -52 | NC_004681.1 | + | 7443 | 0.67 | 0.915347 |
Target: 5'- aGGCAGCGUCGAGGaUC--UGAccGA-CCg -3' miRNA: 3'- gCUGUCGCAGCUCC-AGccACU--UUaGG- -5' |
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18413 | 3' | -52 | NC_004681.1 | + | 19104 | 0.67 | 0.92137 |
Target: 5'- gGACacccGGCG-CGAGGUUcgcagcugGGUGGAcgCCu -3' miRNA: 3'- gCUG----UCGCaGCUCCAG--------CCACUUuaGG- -5' |
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18413 | 3' | -52 | NC_004681.1 | + | 17903 | 0.68 | 0.895689 |
Target: 5'- gCGGCGGCGgCGAGGgucCGGUacucaaGcgGUCCc -3' miRNA: 3'- -GCUGUCGCaGCUCCa--GCCA------CuuUAGG- -5' |
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18413 | 3' | -52 | NC_004681.1 | + | 51000 | 0.68 | 0.888616 |
Target: 5'- --cCGGCGUCGAcGUCGG-GGAGcucuUCCa -3' miRNA: 3'- gcuGUCGCAGCUcCAGCCaCUUU----AGG- -5' |
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18413 | 3' | -52 | NC_004681.1 | + | 38477 | 0.68 | 0.88129 |
Target: 5'- gGGCGGUuUUGGGGUgGGUGAuGGUCa -3' miRNA: 3'- gCUGUCGcAGCUCCAgCCACU-UUAGg -5' |
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18413 | 3' | -52 | NC_004681.1 | + | 13879 | 0.68 | 0.876775 |
Target: 5'- aCGACAGC-UUGGGGgcgccguccuugcgcUUGGUGAAGUUg -3' miRNA: 3'- -GCUGUCGcAGCUCC---------------AGCCACUUUAGg -5' |
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18413 | 3' | -52 | NC_004681.1 | + | 408 | 0.68 | 0.873716 |
Target: 5'- cCGGCAGCccGUgcuucCGcGGGUCGGUGAugacaguUCCa -3' miRNA: 3'- -GCUGUCG--CA-----GC-UCCAGCCACUuu-----AGG- -5' |
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18413 | 3' | -52 | NC_004681.1 | + | 4177 | 0.68 | 0.888616 |
Target: 5'- gCGACccAGCG-CGGGGUUGGcgUGggG-CCa -3' miRNA: 3'- -GCUG--UCGCaGCUCCAGCC--ACuuUaGG- -5' |
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18413 | 3' | -52 | NC_004681.1 | + | 6666 | 0.68 | 0.873716 |
Target: 5'- uGACGGCG-CGcAGGugcuUCGGUGAcgacUCCu -3' miRNA: 3'- gCUGUCGCaGC-UCC----AGCCACUuu--AGG- -5' |
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18413 | 3' | -52 | NC_004681.1 | + | 24750 | 0.69 | 0.832348 |
Target: 5'- gGGCGGguUGUCGGGGUCcgcGGUGuuGUCg -3' miRNA: 3'- gCUGUC--GCAGCUCCAG---CCACuuUAGg -5' |
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18413 | 3' | -52 | NC_004681.1 | + | 22481 | 0.69 | 0.823429 |
Target: 5'- uGAcCAGCGuccacUCGAcGUCGGgGAGGUCCu -3' miRNA: 3'- gCU-GUCGC-----AGCUcCAGCCaCUUUAGG- -5' |
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18413 | 3' | -52 | NC_004681.1 | + | 50099 | 0.69 | 0.849565 |
Target: 5'- aGACGGCG-CGcGGGaUGGUGGucUCCa -3' miRNA: 3'- gCUGUCGCaGC-UCCaGCCACUuuAGG- -5' |
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18413 | 3' | -52 | NC_004681.1 | + | 18739 | 0.69 | 0.857846 |
Target: 5'- gCGACGGCGgCGAGGccgCGcGUGAca-CCg -3' miRNA: 3'- -GCUGUCGCaGCUCCa--GC-CACUuuaGG- -5' |
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18413 | 3' | -52 | NC_004681.1 | + | 55939 | 0.7 | 0.785901 |
Target: 5'- --cCAGguaGUUGGGGUCGGUGAug-CCg -3' miRNA: 3'- gcuGUCg--CAGCUCCAGCCACUuuaGG- -5' |
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18413 | 3' | -52 | NC_004681.1 | + | 51400 | 0.7 | 0.795541 |
Target: 5'- uCGGCGGacucaccggccaUGUaGAGGUCGGUGAuGAUCUg -3' miRNA: 3'- -GCUGUC------------GCAgCUCCAGCCACU-UUAGG- -5' |
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18413 | 3' | -52 | NC_004681.1 | + | 65119 | 0.7 | 0.814315 |
Target: 5'- -uACGGCGUCcuuGGGGUUGGUGucuuuGAGUUCa -3' miRNA: 3'- gcUGUCGCAG---CUCCAGCCAC-----UUUAGG- -5' |
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18413 | 3' | -52 | NC_004681.1 | + | 48748 | 0.71 | 0.756093 |
Target: 5'- cCGcCAGCGUgGAGG-CGGUGucauugCCg -3' miRNA: 3'- -GCuGUCGCAgCUCCaGCCACuuua--GG- -5' |
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18413 | 3' | -52 | NC_004681.1 | + | 6896 | 0.71 | 0.745898 |
Target: 5'- uCGACGGgGUUGAGaGcaccgCGGUGAAG-CCg -3' miRNA: 3'- -GCUGUCgCAGCUC-Ca----GCCACUUUaGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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