miRNA display CGI


Results 21 - 40 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18413 3' -52 NC_004681.1 + 13879 0.68 0.876775
Target:  5'- aCGACAGC-UUGGGGgcgccguccuugcgcUUGGUGAAGUUg -3'
miRNA:   3'- -GCUGUCGcAGCUCC---------------AGCCACUUUAGg -5'
18413 3' -52 NC_004681.1 + 38477 0.68 0.88129
Target:  5'- gGGCGGUuUUGGGGUgGGUGAuGGUCa -3'
miRNA:   3'- gCUGUCGcAGCUCCAgCCACU-UUAGg -5'
18413 3' -52 NC_004681.1 + 4177 0.68 0.888616
Target:  5'- gCGACccAGCG-CGGGGUUGGcgUGggG-CCa -3'
miRNA:   3'- -GCUG--UCGCaGCUCCAGCC--ACuuUaGG- -5'
18413 3' -52 NC_004681.1 + 51000 0.68 0.888616
Target:  5'- --cCGGCGUCGAcGUCGG-GGAGcucuUCCa -3'
miRNA:   3'- gcuGUCGCAGCUcCAGCCaCUUU----AGG- -5'
18413 3' -52 NC_004681.1 + 17903 0.68 0.895689
Target:  5'- gCGGCGGCGgCGAGGgucCGGUacucaaGcgGUCCc -3'
miRNA:   3'- -GCUGUCGCaGCUCCa--GCCA------CuuUAGG- -5'
18413 3' -52 NC_004681.1 + 67549 0.67 0.902504
Target:  5'- uGAUGGCuuguUCGAugGaGUCGGUGAuGUCCg -3'
miRNA:   3'- gCUGUCGc---AGCU--C-CAGCCACUuUAGG- -5'
18413 3' -52 NC_004681.1 + 32014 0.67 0.902504
Target:  5'- uCGGCgccgcgGGUGUCGGcacGGcCGGUGuGAUCCu -3'
miRNA:   3'- -GCUG------UCGCAGCU---CCaGCCACuUUAGG- -5'
18413 3' -52 NC_004681.1 + 61239 0.67 0.909057
Target:  5'- gCGGCGGCGuUCGuuGGacacgaCGGUGAAGUUg -3'
miRNA:   3'- -GCUGUCGC-AGCu-CCa-----GCCACUUUAGg -5'
18413 3' -52 NC_004681.1 + 20688 0.67 0.909057
Target:  5'- aCGACAGUGUCaucuGG-CGGauUGAuuUCCg -3'
miRNA:   3'- -GCUGUCGCAGcu--CCaGCC--ACUuuAGG- -5'
18413 3' -52 NC_004681.1 + 34350 0.67 0.909057
Target:  5'- gCGGCGGCGU-GAGGguugugCGcGcugcgGAAAUCCa -3'
miRNA:   3'- -GCUGUCGCAgCUCCa-----GC-Ca----CUUUAGG- -5'
18413 3' -52 NC_004681.1 + 7443 0.67 0.915347
Target:  5'- aGGCAGCGUCGAGGaUC--UGAccGA-CCg -3'
miRNA:   3'- gCUGUCGCAGCUCC-AGccACU--UUaGG- -5'
18413 3' -52 NC_004681.1 + 44665 0.67 0.915347
Target:  5'- gCGGCGGCGaUGAGGguuuucuucaUgGGUGAAucUCCu -3'
miRNA:   3'- -GCUGUCGCaGCUCC----------AgCCACUUu-AGG- -5'
18413 3' -52 NC_004681.1 + 46823 0.67 0.915347
Target:  5'- uGACAGCGUCGAuGccgCGGaaguUGAAGUgCu -3'
miRNA:   3'- gCUGUCGCAGCUcCa--GCC----ACUUUAgG- -5'
18413 3' -52 NC_004681.1 + 50831 0.67 0.915347
Target:  5'- uCGAUGGUcaucccggGuUCGGGGUCGG-GGAGUUCg -3'
miRNA:   3'- -GCUGUCG--------C-AGCUCCAGCCaCUUUAGG- -5'
18413 3' -52 NC_004681.1 + 48787 0.67 0.92137
Target:  5'- aGugAGgcCGUCGAGGgcgCGgGUGAcAUCUg -3'
miRNA:   3'- gCugUC--GCAGCUCCa--GC-CACUuUAGG- -5'
18413 3' -52 NC_004681.1 + 19104 0.67 0.92137
Target:  5'- gGACacccGGCG-CGAGGUUcgcagcugGGUGGAcgCCu -3'
miRNA:   3'- gCUG----UCGCaGCUCCAG--------CCACUUuaGG- -5'
18413 3' -52 NC_004681.1 + 19157 0.67 0.92137
Target:  5'- uCGACAGUgaaGUCGAGcUCGGcggauucauagaUGGAGUCg -3'
miRNA:   3'- -GCUGUCG---CAGCUCcAGCC------------ACUUUAGg -5'
18413 3' -52 NC_004681.1 + 53909 0.67 0.927125
Target:  5'- uGGCgAGCaGgauggCGAGGUgGGUGAggAAUCUg -3'
miRNA:   3'- gCUG-UCG-Ca----GCUCCAgCCACU--UUAGG- -5'
18413 3' -52 NC_004681.1 + 29590 0.66 0.932613
Target:  5'- uGACAGCcacCGAGGUgguccCGGUGAGGg-- -3'
miRNA:   3'- gCUGUCGca-GCUCCA-----GCCACUUUagg -5'
18413 3' -52 NC_004681.1 + 12491 0.66 0.932613
Target:  5'- cCGACgAGCGUCGccG-CGGUGGuggugCCa -3'
miRNA:   3'- -GCUG-UCGCAGCucCaGCCACUuua--GG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.