Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18413 | 3' | -52 | NC_004681.1 | + | 52037 | 0.66 | 0.951904 |
Target: 5'- uGugGGUGUCGAGGuauuccUCGacgcgcucccacGUGGAGUUCu -3' miRNA: 3'- gCugUCGCAGCUCC------AGC------------CACUUUAGG- -5' |
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18413 | 3' | -52 | NC_004681.1 | + | 26906 | 0.66 | 0.951904 |
Target: 5'- aCGuCAGCGUUGGccgccgCGGUGAAGUUg -3' miRNA: 3'- -GCuGUCGCAGCUcca---GCCACUUUAGg -5' |
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18413 | 3' | -52 | NC_004681.1 | + | 23821 | 0.66 | 0.947476 |
Target: 5'- gGGCAGCGUCucGGaccCGGUcagcucGAAUCCg -3' miRNA: 3'- gCUGUCGCAGcuCCa--GCCAc-----UUUAGG- -5' |
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18413 | 3' | -52 | NC_004681.1 | + | 45206 | 0.66 | 0.946096 |
Target: 5'- gCGACGGCGUCGGccccGGUcuugagcgagaccgCGGcGAGggCCu -3' miRNA: 3'- -GCUGUCGCAGCU----CCA--------------GCCaCUUuaGG- -5' |
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18413 | 3' | -52 | NC_004681.1 | + | 9301 | 0.66 | 0.942786 |
Target: 5'- -cACAGCGuUCGGGGUCuGGaacagggucagcUGGAuGUCCa -3' miRNA: 3'- gcUGUCGC-AGCUCCAG-CC------------ACUU-UAGG- -5' |
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18413 | 3' | -52 | NC_004681.1 | + | 23907 | 0.66 | 0.942786 |
Target: 5'- aCGACuuucGCGucaUCGAGGUagaaggugccugCGGUGGcuUCCu -3' miRNA: 3'- -GCUGu---CGC---AGCUCCA------------GCCACUuuAGG- -5' |
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18413 | 3' | -52 | NC_004681.1 | + | 4913 | 0.66 | 0.942786 |
Target: 5'- uGGCAGCcauGUCGcGGUCGGguuuGUCa -3' miRNA: 3'- gCUGUCG---CAGCuCCAGCCacuuUAGg -5' |
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18413 | 3' | -52 | NC_004681.1 | + | 47126 | 0.66 | 0.942786 |
Target: 5'- uCGuCGGgGUCGGGcucGUCGGUGggGa-- -3' miRNA: 3'- -GCuGUCgCAGCUC---CAGCCACuuUagg -5' |
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18413 | 3' | -52 | NC_004681.1 | + | 12491 | 0.66 | 0.932613 |
Target: 5'- cCGACgAGCGUCGccG-CGGUGGuggugCCa -3' miRNA: 3'- -GCUG-UCGCAGCucCaGCCACUuua--GG- -5' |
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18413 | 3' | -52 | NC_004681.1 | + | 29590 | 0.66 | 0.932613 |
Target: 5'- uGACAGCcacCGAGGUgguccCGGUGAGGg-- -3' miRNA: 3'- gCUGUCGca-GCUCCA-----GCCACUUUagg -5' |
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18413 | 3' | -52 | NC_004681.1 | + | 40105 | 0.66 | 0.932613 |
Target: 5'- uGACugcaccccgGGgGUCGccAGGUCGGUGAccgCCc -3' miRNA: 3'- gCUG---------UCgCAGC--UCCAGCCACUuuaGG- -5' |
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18413 | 3' | -52 | NC_004681.1 | + | 53909 | 0.67 | 0.927125 |
Target: 5'- uGGCgAGCaGgauggCGAGGUgGGUGAggAAUCUg -3' miRNA: 3'- gCUG-UCG-Ca----GCUCCAgCCACU--UUAGG- -5' |
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18413 | 3' | -52 | NC_004681.1 | + | 19104 | 0.67 | 0.92137 |
Target: 5'- gGACacccGGCG-CGAGGUUcgcagcugGGUGGAcgCCu -3' miRNA: 3'- gCUG----UCGCaGCUCCAG--------CCACUUuaGG- -5' |
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18413 | 3' | -52 | NC_004681.1 | + | 19157 | 0.67 | 0.92137 |
Target: 5'- uCGACAGUgaaGUCGAGcUCGGcggauucauagaUGGAGUCg -3' miRNA: 3'- -GCUGUCG---CAGCUCcAGCC------------ACUUUAGg -5' |
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18413 | 3' | -52 | NC_004681.1 | + | 48787 | 0.67 | 0.92137 |
Target: 5'- aGugAGgcCGUCGAGGgcgCGgGUGAcAUCUg -3' miRNA: 3'- gCugUC--GCAGCUCCa--GC-CACUuUAGG- -5' |
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18413 | 3' | -52 | NC_004681.1 | + | 50831 | 0.67 | 0.915347 |
Target: 5'- uCGAUGGUcaucccggGuUCGGGGUCGG-GGAGUUCg -3' miRNA: 3'- -GCUGUCG--------C-AGCUCCAGCCaCUUUAGG- -5' |
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18413 | 3' | -52 | NC_004681.1 | + | 46823 | 0.67 | 0.915347 |
Target: 5'- uGACAGCGUCGAuGccgCGGaaguUGAAGUgCu -3' miRNA: 3'- gCUGUCGCAGCUcCa--GCC----ACUUUAgG- -5' |
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18413 | 3' | -52 | NC_004681.1 | + | 7443 | 0.67 | 0.915347 |
Target: 5'- aGGCAGCGUCGAGGaUC--UGAccGA-CCg -3' miRNA: 3'- gCUGUCGCAGCUCC-AGccACU--UUaGG- -5' |
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18413 | 3' | -52 | NC_004681.1 | + | 44665 | 0.67 | 0.915347 |
Target: 5'- gCGGCGGCGaUGAGGguuuucuucaUgGGUGAAucUCCu -3' miRNA: 3'- -GCUGUCGCaGCUCC----------AgCCACUUu-AGG- -5' |
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18413 | 3' | -52 | NC_004681.1 | + | 61239 | 0.67 | 0.909057 |
Target: 5'- gCGGCGGCGuUCGuuGGacacgaCGGUGAAGUUg -3' miRNA: 3'- -GCUGUCGC-AGCu-CCa-----GCCACUUUAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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