Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 18413 | 3' | -52 | NC_004681.1 | + | 51357 | 0.72 | 0.661224 |
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Target: 5'- aGACGGUggcgugGUUGGGG-CGGUaGAAGUCCu -3' miRNA: 3'- gCUGUCG------CAGCUCCaGCCA-CUUUAGG- -5' |
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| 18413 | 3' | -52 | NC_004681.1 | + | 34096 | 0.72 | 0.661224 |
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Target: 5'- aCGACGggcacaccuGCGUaccCGAGGUCGGUGAcaaCCu -3' miRNA: 3'- -GCUGU---------CGCA---GCUCCAGCCACUuuaGG- -5' |
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| 18413 | 3' | -52 | NC_004681.1 | + | 7193 | 0.73 | 0.650412 |
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Target: 5'- aCGAugcCAGCGUUGAGGaguuccCGGUGggGggugCCg -3' miRNA: 3'- -GCU---GUCGCAGCUCCa-----GCCACuuUa---GG- -5' |
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| 18413 | 3' | -52 | NC_004681.1 | + | 53814 | 0.73 | 0.650412 |
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Target: 5'- gGAUGGCGaCGAGGUCGGcGAcGGUCa -3' miRNA: 3'- gCUGUCGCaGCUCCAGCCaCU-UUAGg -5' |
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| 18413 | 3' | -52 | NC_004681.1 | + | 53638 | 0.75 | 0.511621 |
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Target: 5'- aCGACGGCGcCcuGGUCGGUGucgucAUCCa -3' miRNA: 3'- -GCUGUCGCaGcuCCAGCCACuu---UAGG- -5' |
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| 18413 | 3' | -52 | NC_004681.1 | + | 28038 | 0.76 | 0.460281 |
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Target: 5'- cCGACGGCGcuggcgcuggcggUCGAGG-CGGUGGcggcaagaAGUCCa -3' miRNA: 3'- -GCUGUCGC-------------AGCUCCaGCCACU--------UUAGG- -5' |
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| 18413 | 3' | -52 | NC_004681.1 | + | 9069 | 0.77 | 0.422925 |
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Target: 5'- cCGACAGCGagGAGGccgaggaggCGGUGAAG-CCg -3' miRNA: 3'- -GCUGUCGCagCUCCa--------GCCACUUUaGG- -5' |
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| 18413 | 3' | -52 | NC_004681.1 | + | 52640 | 0.81 | 0.248034 |
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Target: 5'- gCGAUAGCGUCGaAGGcugccucggccaagUCGGUGAGGUCg -3' miRNA: 3'- -GCUGUCGCAGC-UCC--------------AGCCACUUUAGg -5' |
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| 18413 | 3' | -52 | NC_004681.1 | + | 22338 | 1.12 | 0.002657 |
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Target: 5'- uCGACAGCGUCGAGGUCGGUGAAAUCCc -3' miRNA: 3'- -GCUGUCGCAGCUCCAGCCACUUUAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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