miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18413 3' -52 NC_004681.1 + 408 0.68 0.873716
Target:  5'- cCGGCAGCccGUgcuucCGcGGGUCGGUGAugacaguUCCa -3'
miRNA:   3'- -GCUGUCG--CA-----GC-UCCAGCCACUuu-----AGG- -5'
18413 3' -52 NC_004681.1 + 4177 0.68 0.888616
Target:  5'- gCGACccAGCG-CGGGGUUGGcgUGggG-CCa -3'
miRNA:   3'- -GCUG--UCGCaGCUCCAGCC--ACuuUaGG- -5'
18413 3' -52 NC_004681.1 + 4913 0.66 0.942786
Target:  5'- uGGCAGCcauGUCGcGGUCGGguuuGUCa -3'
miRNA:   3'- gCUGUCG---CAGCuCCAGCCacuuUAGg -5'
18413 3' -52 NC_004681.1 + 6666 0.68 0.873716
Target:  5'- uGACGGCG-CGcAGGugcuUCGGUGAcgacUCCu -3'
miRNA:   3'- gCUGUCGCaGC-UCC----AGCCACUuu--AGG- -5'
18413 3' -52 NC_004681.1 + 6896 0.71 0.745898
Target:  5'- uCGACGGgGUUGAGaGcaccgCGGUGAAG-CCg -3'
miRNA:   3'- -GCUGUCgCAGCUC-Ca----GCCACUUUaGG- -5'
18413 3' -52 NC_004681.1 + 7193 0.73 0.650412
Target:  5'- aCGAugcCAGCGUUGAGGaguuccCGGUGggGggugCCg -3'
miRNA:   3'- -GCU---GUCGCAGCUCCa-----GCCACuuUa---GG- -5'
18413 3' -52 NC_004681.1 + 7443 0.67 0.915347
Target:  5'- aGGCAGCGUCGAGGaUC--UGAccGA-CCg -3'
miRNA:   3'- gCUGUCGCAGCUCC-AGccACU--UUaGG- -5'
18413 3' -52 NC_004681.1 + 9069 0.77 0.422925
Target:  5'- cCGACAGCGagGAGGccgaggaggCGGUGAAG-CCg -3'
miRNA:   3'- -GCUGUCGCagCUCCa--------GCCACUUUaGG- -5'
18413 3' -52 NC_004681.1 + 9301 0.66 0.942786
Target:  5'- -cACAGCGuUCGGGGUCuGGaacagggucagcUGGAuGUCCa -3'
miRNA:   3'- gcUGUCGC-AGCUCCAG-CC------------ACUU-UAGG- -5'
18413 3' -52 NC_004681.1 + 12491 0.66 0.932613
Target:  5'- cCGACgAGCGUCGccG-CGGUGGuggugCCa -3'
miRNA:   3'- -GCUG-UCGCAGCucCaGCCACUuua--GG- -5'
18413 3' -52 NC_004681.1 + 13879 0.68 0.876775
Target:  5'- aCGACAGC-UUGGGGgcgccguccuugcgcUUGGUGAAGUUg -3'
miRNA:   3'- -GCUGUCGcAGCUCC---------------AGCCACUUUAGg -5'
18413 3' -52 NC_004681.1 + 17903 0.68 0.895689
Target:  5'- gCGGCGGCGgCGAGGgucCGGUacucaaGcgGUCCc -3'
miRNA:   3'- -GCUGUCGCaGCUCCa--GCCA------CuuUAGG- -5'
18413 3' -52 NC_004681.1 + 18739 0.69 0.857846
Target:  5'- gCGACGGCGgCGAGGccgCGcGUGAca-CCg -3'
miRNA:   3'- -GCUGUCGCaGCUCCa--GC-CACUuuaGG- -5'
18413 3' -52 NC_004681.1 + 19104 0.67 0.92137
Target:  5'- gGACacccGGCG-CGAGGUUcgcagcugGGUGGAcgCCu -3'
miRNA:   3'- gCUG----UCGCaGCUCCAG--------CCACUUuaGG- -5'
18413 3' -52 NC_004681.1 + 19157 0.67 0.92137
Target:  5'- uCGACAGUgaaGUCGAGcUCGGcggauucauagaUGGAGUCg -3'
miRNA:   3'- -GCUGUCG---CAGCUCcAGCC------------ACUUUAGg -5'
18413 3' -52 NC_004681.1 + 20688 0.67 0.909057
Target:  5'- aCGACAGUGUCaucuGG-CGGauUGAuuUCCg -3'
miRNA:   3'- -GCUGUCGCAGcu--CCaGCC--ACUuuAGG- -5'
18413 3' -52 NC_004681.1 + 22338 1.12 0.002657
Target:  5'- uCGACAGCGUCGAGGUCGGUGAAAUCCc -3'
miRNA:   3'- -GCUGUCGCAGCUCCAGCCACUUUAGG- -5'
18413 3' -52 NC_004681.1 + 22481 0.69 0.823429
Target:  5'- uGAcCAGCGuccacUCGAcGUCGGgGAGGUCCu -3'
miRNA:   3'- gCU-GUCGC-----AGCUcCAGCCaCUUUAGG- -5'
18413 3' -52 NC_004681.1 + 23821 0.66 0.947476
Target:  5'- gGGCAGCGUCucGGaccCGGUcagcucGAAUCCg -3'
miRNA:   3'- gCUGUCGCAGcuCCa--GCCAc-----UUUAGG- -5'
18413 3' -52 NC_004681.1 + 23907 0.66 0.942786
Target:  5'- aCGACuuucGCGucaUCGAGGUagaaggugccugCGGUGGcuUCCu -3'
miRNA:   3'- -GCUGu---CGC---AGCUCCA------------GCCACUuuAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.