Results 21 - 40 of 49 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18413 | 3' | -52 | NC_004681.1 | + | 24750 | 0.69 | 0.832348 |
Target: 5'- gGGCGGguUGUCGGGGUCcgcGGUGuuGUCg -3' miRNA: 3'- gCUGUC--GCAGCUCCAG---CCACuuUAGg -5' |
|||||||
18413 | 3' | -52 | NC_004681.1 | + | 26906 | 0.66 | 0.951904 |
Target: 5'- aCGuCAGCGUUGGccgccgCGGUGAAGUUg -3' miRNA: 3'- -GCuGUCGCAGCUcca---GCCACUUUAGg -5' |
|||||||
18413 | 3' | -52 | NC_004681.1 | + | 28038 | 0.76 | 0.460281 |
Target: 5'- cCGACGGCGcuggcgcuggcggUCGAGG-CGGUGGcggcaagaAGUCCa -3' miRNA: 3'- -GCUGUCGC-------------AGCUCCaGCCACU--------UUAGG- -5' |
|||||||
18413 | 3' | -52 | NC_004681.1 | + | 29590 | 0.66 | 0.932613 |
Target: 5'- uGACAGCcacCGAGGUgguccCGGUGAGGg-- -3' miRNA: 3'- gCUGUCGca-GCUCCA-----GCCACUUUagg -5' |
|||||||
18413 | 3' | -52 | NC_004681.1 | + | 32014 | 0.67 | 0.902504 |
Target: 5'- uCGGCgccgcgGGUGUCGGcacGGcCGGUGuGAUCCu -3' miRNA: 3'- -GCUG------UCGCAGCU---CCaGCCACuUUAGG- -5' |
|||||||
18413 | 3' | -52 | NC_004681.1 | + | 34096 | 0.72 | 0.661224 |
Target: 5'- aCGACGggcacaccuGCGUaccCGAGGUCGGUGAcaaCCu -3' miRNA: 3'- -GCUGU---------CGCA---GCUCCAGCCACUuuaGG- -5' |
|||||||
18413 | 3' | -52 | NC_004681.1 | + | 34350 | 0.67 | 0.909057 |
Target: 5'- gCGGCGGCGU-GAGGguugugCGcGcugcgGAAAUCCa -3' miRNA: 3'- -GCUGUCGCAgCUCCa-----GC-Ca----CUUUAGG- -5' |
|||||||
18413 | 3' | -52 | NC_004681.1 | + | 38477 | 0.68 | 0.88129 |
Target: 5'- gGGCGGUuUUGGGGUgGGUGAuGGUCa -3' miRNA: 3'- gCUGUCGcAGCUCCAgCCACU-UUAGg -5' |
|||||||
18413 | 3' | -52 | NC_004681.1 | + | 40105 | 0.66 | 0.932613 |
Target: 5'- uGACugcaccccgGGgGUCGccAGGUCGGUGAccgCCc -3' miRNA: 3'- gCUG---------UCgCAGC--UCCAGCCACUuuaGG- -5' |
|||||||
18413 | 3' | -52 | NC_004681.1 | + | 44665 | 0.67 | 0.915347 |
Target: 5'- gCGGCGGCGaUGAGGguuuucuucaUgGGUGAAucUCCu -3' miRNA: 3'- -GCUGUCGCaGCUCC----------AgCCACUUu-AGG- -5' |
|||||||
18413 | 3' | -52 | NC_004681.1 | + | 45206 | 0.66 | 0.946096 |
Target: 5'- gCGACGGCGUCGGccccGGUcuugagcgagaccgCGGcGAGggCCu -3' miRNA: 3'- -GCUGUCGCAGCU----CCA--------------GCCaCUUuaGG- -5' |
|||||||
18413 | 3' | -52 | NC_004681.1 | + | 46823 | 0.67 | 0.915347 |
Target: 5'- uGACAGCGUCGAuGccgCGGaaguUGAAGUgCu -3' miRNA: 3'- gCUGUCGCAGCUcCa--GCC----ACUUUAgG- -5' |
|||||||
18413 | 3' | -52 | NC_004681.1 | + | 47126 | 0.66 | 0.942786 |
Target: 5'- uCGuCGGgGUCGGGcucGUCGGUGggGa-- -3' miRNA: 3'- -GCuGUCgCAGCUC---CAGCCACuuUagg -5' |
|||||||
18413 | 3' | -52 | NC_004681.1 | + | 48748 | 0.71 | 0.756093 |
Target: 5'- cCGcCAGCGUgGAGG-CGGUGucauugCCg -3' miRNA: 3'- -GCuGUCGCAgCUCCaGCCACuuua--GG- -5' |
|||||||
18413 | 3' | -52 | NC_004681.1 | + | 48787 | 0.67 | 0.92137 |
Target: 5'- aGugAGgcCGUCGAGGgcgCGgGUGAcAUCUg -3' miRNA: 3'- gCugUC--GCAGCUCCa--GC-CACUuUAGG- -5' |
|||||||
18413 | 3' | -52 | NC_004681.1 | + | 50099 | 0.69 | 0.849565 |
Target: 5'- aGACGGCG-CGcGGGaUGGUGGucUCCa -3' miRNA: 3'- gCUGUCGCaGC-UCCaGCCACUuuAGG- -5' |
|||||||
18413 | 3' | -52 | NC_004681.1 | + | 50831 | 0.67 | 0.915347 |
Target: 5'- uCGAUGGUcaucccggGuUCGGGGUCGG-GGAGUUCg -3' miRNA: 3'- -GCUGUCG--------C-AGCUCCAGCCaCUUUAGG- -5' |
|||||||
18413 | 3' | -52 | NC_004681.1 | + | 51000 | 0.68 | 0.888616 |
Target: 5'- --cCGGCGUCGAcGUCGG-GGAGcucuUCCa -3' miRNA: 3'- gcuGUCGCAGCUcCAGCCaCUUU----AGG- -5' |
|||||||
18413 | 3' | -52 | NC_004681.1 | + | 51357 | 0.72 | 0.661224 |
Target: 5'- aGACGGUggcgugGUUGGGG-CGGUaGAAGUCCu -3' miRNA: 3'- gCUGUCG------CAGCUCCaGCCA-CUUUAGG- -5' |
|||||||
18413 | 3' | -52 | NC_004681.1 | + | 51400 | 0.7 | 0.795541 |
Target: 5'- uCGGCGGacucaccggccaUGUaGAGGUCGGUGAuGAUCUg -3' miRNA: 3'- -GCUGUC------------GCAgCUCCAGCCACU-UUAGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home