miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18413 3' -52 NC_004681.1 + 40105 0.66 0.932613
Target:  5'- uGACugcaccccgGGgGUCGccAGGUCGGUGAccgCCc -3'
miRNA:   3'- gCUG---------UCgCAGC--UCCAGCCACUuuaGG- -5'
18413 3' -52 NC_004681.1 + 38477 0.68 0.88129
Target:  5'- gGGCGGUuUUGGGGUgGGUGAuGGUCa -3'
miRNA:   3'- gCUGUCGcAGCUCCAgCCACU-UUAGg -5'
18413 3' -52 NC_004681.1 + 34350 0.67 0.909057
Target:  5'- gCGGCGGCGU-GAGGguugugCGcGcugcgGAAAUCCa -3'
miRNA:   3'- -GCUGUCGCAgCUCCa-----GC-Ca----CUUUAGG- -5'
18413 3' -52 NC_004681.1 + 34096 0.72 0.661224
Target:  5'- aCGACGggcacaccuGCGUaccCGAGGUCGGUGAcaaCCu -3'
miRNA:   3'- -GCUGU---------CGCA---GCUCCAGCCACUuuaGG- -5'
18413 3' -52 NC_004681.1 + 32014 0.67 0.902504
Target:  5'- uCGGCgccgcgGGUGUCGGcacGGcCGGUGuGAUCCu -3'
miRNA:   3'- -GCUG------UCGCAGCU---CCaGCCACuUUAGG- -5'
18413 3' -52 NC_004681.1 + 29590 0.66 0.932613
Target:  5'- uGACAGCcacCGAGGUgguccCGGUGAGGg-- -3'
miRNA:   3'- gCUGUCGca-GCUCCA-----GCCACUUUagg -5'
18413 3' -52 NC_004681.1 + 28038 0.76 0.460281
Target:  5'- cCGACGGCGcuggcgcuggcggUCGAGG-CGGUGGcggcaagaAGUCCa -3'
miRNA:   3'- -GCUGUCGC-------------AGCUCCaGCCACU--------UUAGG- -5'
18413 3' -52 NC_004681.1 + 26906 0.66 0.951904
Target:  5'- aCGuCAGCGUUGGccgccgCGGUGAAGUUg -3'
miRNA:   3'- -GCuGUCGCAGCUcca---GCCACUUUAGg -5'
18413 3' -52 NC_004681.1 + 24750 0.69 0.832348
Target:  5'- gGGCGGguUGUCGGGGUCcgcGGUGuuGUCg -3'
miRNA:   3'- gCUGUC--GCAGCUCCAG---CCACuuUAGg -5'
18413 3' -52 NC_004681.1 + 23907 0.66 0.942786
Target:  5'- aCGACuuucGCGucaUCGAGGUagaaggugccugCGGUGGcuUCCu -3'
miRNA:   3'- -GCUGu---CGC---AGCUCCA------------GCCACUuuAGG- -5'
18413 3' -52 NC_004681.1 + 23821 0.66 0.947476
Target:  5'- gGGCAGCGUCucGGaccCGGUcagcucGAAUCCg -3'
miRNA:   3'- gCUGUCGCAGcuCCa--GCCAc-----UUUAGG- -5'
18413 3' -52 NC_004681.1 + 22481 0.69 0.823429
Target:  5'- uGAcCAGCGuccacUCGAcGUCGGgGAGGUCCu -3'
miRNA:   3'- gCU-GUCGC-----AGCUcCAGCCaCUUUAGG- -5'
18413 3' -52 NC_004681.1 + 22338 1.12 0.002657
Target:  5'- uCGACAGCGUCGAGGUCGGUGAAAUCCc -3'
miRNA:   3'- -GCUGUCGCAGCUCCAGCCACUUUAGG- -5'
18413 3' -52 NC_004681.1 + 20688 0.67 0.909057
Target:  5'- aCGACAGUGUCaucuGG-CGGauUGAuuUCCg -3'
miRNA:   3'- -GCUGUCGCAGcu--CCaGCC--ACUuuAGG- -5'
18413 3' -52 NC_004681.1 + 19157 0.67 0.92137
Target:  5'- uCGACAGUgaaGUCGAGcUCGGcggauucauagaUGGAGUCg -3'
miRNA:   3'- -GCUGUCG---CAGCUCcAGCC------------ACUUUAGg -5'
18413 3' -52 NC_004681.1 + 19104 0.67 0.92137
Target:  5'- gGACacccGGCG-CGAGGUUcgcagcugGGUGGAcgCCu -3'
miRNA:   3'- gCUG----UCGCaGCUCCAG--------CCACUUuaGG- -5'
18413 3' -52 NC_004681.1 + 18739 0.69 0.857846
Target:  5'- gCGACGGCGgCGAGGccgCGcGUGAca-CCg -3'
miRNA:   3'- -GCUGUCGCaGCUCCa--GC-CACUuuaGG- -5'
18413 3' -52 NC_004681.1 + 17903 0.68 0.895689
Target:  5'- gCGGCGGCGgCGAGGgucCGGUacucaaGcgGUCCc -3'
miRNA:   3'- -GCUGUCGCaGCUCCa--GCCA------CuuUAGG- -5'
18413 3' -52 NC_004681.1 + 13879 0.68 0.876775
Target:  5'- aCGACAGC-UUGGGGgcgccguccuugcgcUUGGUGAAGUUg -3'
miRNA:   3'- -GCUGUCGcAGCUCC---------------AGCCACUUUAGg -5'
18413 3' -52 NC_004681.1 + 12491 0.66 0.932613
Target:  5'- cCGACgAGCGUCGccG-CGGUGGuggugCCa -3'
miRNA:   3'- -GCUG-UCGCAGCucCaGCCACUuua--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.