miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18413 3' -52 NC_004681.1 + 44665 0.67 0.915347
Target:  5'- gCGGCGGCGaUGAGGguuuucuucaUgGGUGAAucUCCu -3'
miRNA:   3'- -GCUGUCGCaGCUCC----------AgCCACUUu-AGG- -5'
18413 3' -52 NC_004681.1 + 19157 0.67 0.92137
Target:  5'- uCGACAGUgaaGUCGAGcUCGGcggauucauagaUGGAGUCg -3'
miRNA:   3'- -GCUGUCG---CAGCUCcAGCC------------ACUUUAGg -5'
18413 3' -52 NC_004681.1 + 53909 0.67 0.927125
Target:  5'- uGGCgAGCaGgauggCGAGGUgGGUGAggAAUCUg -3'
miRNA:   3'- gCUG-UCG-Ca----GCUCCAgCCACU--UUAGG- -5'
18413 3' -52 NC_004681.1 + 29590 0.66 0.932613
Target:  5'- uGACAGCcacCGAGGUgguccCGGUGAGGg-- -3'
miRNA:   3'- gCUGUCGca-GCUCCA-----GCCACUUUagg -5'
18413 3' -52 NC_004681.1 + 12491 0.66 0.932613
Target:  5'- cCGACgAGCGUCGccG-CGGUGGuggugCCa -3'
miRNA:   3'- -GCUG-UCGCAGCucCaGCCACUuua--GG- -5'
18413 3' -52 NC_004681.1 + 408 0.68 0.873716
Target:  5'- cCGGCAGCccGUgcuucCGcGGGUCGGUGAugacaguUCCa -3'
miRNA:   3'- -GCUGUCG--CA-----GC-UCCAGCCACUuu-----AGG- -5'
18413 3' -52 NC_004681.1 + 6666 0.68 0.873716
Target:  5'- uGACGGCG-CGcAGGugcuUCGGUGAcgacUCCu -3'
miRNA:   3'- gCUGUCGCaGC-UCC----AGCCACUuu--AGG- -5'
18413 3' -52 NC_004681.1 + 50099 0.69 0.849565
Target:  5'- aGACGGCG-CGcGGGaUGGUGGucUCCa -3'
miRNA:   3'- gCUGUCGCaGC-UCCaGCCACUuuAGG- -5'
18413 3' -52 NC_004681.1 + 9069 0.77 0.422925
Target:  5'- cCGACAGCGagGAGGccgaggaggCGGUGAAG-CCg -3'
miRNA:   3'- -GCUGUCGCagCUCCa--------GCCACUUUaGG- -5'
18413 3' -52 NC_004681.1 + 53814 0.73 0.650412
Target:  5'- gGAUGGCGaCGAGGUCGGcGAcGGUCa -3'
miRNA:   3'- gCUGUCGCaGCUCCAGCCaCU-UUAGg -5'
18413 3' -52 NC_004681.1 + 7193 0.73 0.650412
Target:  5'- aCGAugcCAGCGUUGAGGaguuccCGGUGggGggugCCg -3'
miRNA:   3'- -GCU---GUCGCAGCUCCa-----GCCACuuUa---GG- -5'
18413 3' -52 NC_004681.1 + 51357 0.72 0.661224
Target:  5'- aGACGGUggcgugGUUGGGG-CGGUaGAAGUCCu -3'
miRNA:   3'- gCUGUCG------CAGCUCCaGCCA-CUUUAGG- -5'
18413 3' -52 NC_004681.1 + 34096 0.72 0.661224
Target:  5'- aCGACGggcacaccuGCGUaccCGAGGUCGGUGAcaaCCu -3'
miRNA:   3'- -GCUGU---------CGCA---GCUCCAGCCACUuuaGG- -5'
18413 3' -52 NC_004681.1 + 6896 0.71 0.745898
Target:  5'- uCGACGGgGUUGAGaGcaccgCGGUGAAG-CCg -3'
miRNA:   3'- -GCUGUCgCAGCUC-Ca----GCCACUUUaGG- -5'
18413 3' -52 NC_004681.1 + 48748 0.71 0.756093
Target:  5'- cCGcCAGCGUgGAGG-CGGUGucauugCCg -3'
miRNA:   3'- -GCuGUCGCAgCUCCaGCCACuuua--GG- -5'
18413 3' -52 NC_004681.1 + 55939 0.7 0.785901
Target:  5'- --cCAGguaGUUGGGGUCGGUGAug-CCg -3'
miRNA:   3'- gcuGUCg--CAGCUCCAGCCACUuuaGG- -5'
18413 3' -52 NC_004681.1 + 51400 0.7 0.795541
Target:  5'- uCGGCGGacucaccggccaUGUaGAGGUCGGUGAuGAUCUg -3'
miRNA:   3'- -GCUGUC------------GCAgCUCCAGCCACU-UUAGG- -5'
18413 3' -52 NC_004681.1 + 65119 0.7 0.814315
Target:  5'- -uACGGCGUCcuuGGGGUUGGUGucuuuGAGUUCa -3'
miRNA:   3'- gcUGUCGCAG---CUCCAGCCAC-----UUUAGG- -5'
18413 3' -52 NC_004681.1 + 22481 0.69 0.823429
Target:  5'- uGAcCAGCGuccacUCGAcGUCGGgGAGGUCCu -3'
miRNA:   3'- gCU-GUCGC-----AGCUcCAGCCaCUUUAGG- -5'
18413 3' -52 NC_004681.1 + 24750 0.69 0.832348
Target:  5'- gGGCGGguUGUCGGGGUCcgcGGUGuuGUCg -3'
miRNA:   3'- gCUGUC--GCAGCUCCAG---CCACuuUAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.