Results 41 - 49 of 49 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 18413 | 3' | -52 | NC_004681.1 | + | 51400 | 0.7 | 0.795541 |
|
Target: 5'- uCGGCGGacucaccggccaUGUaGAGGUCGGUGAuGAUCUg -3' miRNA: 3'- -GCUGUC------------GCAgCUCCAGCCACU-UUAGG- -5' |
|||||||
| 18413 | 3' | -52 | NC_004681.1 | + | 65119 | 0.7 | 0.814315 |
|
Target: 5'- -uACGGCGUCcuuGGGGUUGGUGucuuuGAGUUCa -3' miRNA: 3'- gcUGUCGCAG---CUCCAGCCAC-----UUUAGG- -5' |
|||||||
| 18413 | 3' | -52 | NC_004681.1 | + | 22481 | 0.69 | 0.823429 |
|
Target: 5'- uGAcCAGCGuccacUCGAcGUCGGgGAGGUCCu -3' miRNA: 3'- gCU-GUCGC-----AGCUcCAGCCaCUUUAGG- -5' |
|||||||
| 18413 | 3' | -52 | NC_004681.1 | + | 24750 | 0.69 | 0.832348 |
|
Target: 5'- gGGCGGguUGUCGGGGUCcgcGGUGuuGUCg -3' miRNA: 3'- gCUGUC--GCAGCUCCAG---CCACuuUAGg -5' |
|||||||
| 18413 | 3' | -52 | NC_004681.1 | + | 50099 | 0.69 | 0.849565 |
|
Target: 5'- aGACGGCG-CGcGGGaUGGUGGucUCCa -3' miRNA: 3'- gCUGUCGCaGC-UCCaGCCACUuuAGG- -5' |
|||||||
| 18413 | 3' | -52 | NC_004681.1 | + | 6666 | 0.68 | 0.873716 |
|
Target: 5'- uGACGGCG-CGcAGGugcuUCGGUGAcgacUCCu -3' miRNA: 3'- gCUGUCGCaGC-UCC----AGCCACUuu--AGG- -5' |
|||||||
| 18413 | 3' | -52 | NC_004681.1 | + | 408 | 0.68 | 0.873716 |
|
Target: 5'- cCGGCAGCccGUgcuucCGcGGGUCGGUGAugacaguUCCa -3' miRNA: 3'- -GCUGUCG--CA-----GC-UCCAGCCACUuu-----AGG- -5' |
|||||||
| 18413 | 3' | -52 | NC_004681.1 | + | 13879 | 0.68 | 0.876775 |
|
Target: 5'- aCGACAGC-UUGGGGgcgccguccuugcgcUUGGUGAAGUUg -3' miRNA: 3'- -GCUGUCGcAGCUCC---------------AGCCACUUUAGg -5' |
|||||||
| 18413 | 3' | -52 | NC_004681.1 | + | 52640 | 0.81 | 0.248034 |
|
Target: 5'- gCGAUAGCGUCGaAGGcugccucggccaagUCGGUGAGGUCg -3' miRNA: 3'- -GCUGUCGCAGC-UCC--------------AGCCACUUUAGg -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home