Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18413 | 3' | -52 | NC_004681.1 | + | 55939 | 0.7 | 0.785901 |
Target: 5'- --cCAGguaGUUGGGGUCGGUGAug-CCg -3' miRNA: 3'- gcuGUCg--CAGCUCCAGCCACUuuaGG- -5' |
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18413 | 3' | -52 | NC_004681.1 | + | 48748 | 0.71 | 0.756093 |
Target: 5'- cCGcCAGCGUgGAGG-CGGUGucauugCCg -3' miRNA: 3'- -GCuGUCGCAgCUCCaGCCACuuua--GG- -5' |
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18413 | 3' | -52 | NC_004681.1 | + | 47126 | 0.66 | 0.942786 |
Target: 5'- uCGuCGGgGUCGGGcucGUCGGUGggGa-- -3' miRNA: 3'- -GCuGUCgCAGCUC---CAGCCACuuUagg -5' |
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18413 | 3' | -52 | NC_004681.1 | + | 23907 | 0.66 | 0.942786 |
Target: 5'- aCGACuuucGCGucaUCGAGGUagaaggugccugCGGUGGcuUCCu -3' miRNA: 3'- -GCUGu---CGC---AGCUCCA------------GCCACUuuAGG- -5' |
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18413 | 3' | -52 | NC_004681.1 | + | 23821 | 0.66 | 0.947476 |
Target: 5'- gGGCAGCGUCucGGaccCGGUcagcucGAAUCCg -3' miRNA: 3'- gCUGUCGCAGcuCCa--GCCAc-----UUUAGG- -5' |
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18413 | 3' | -52 | NC_004681.1 | + | 26906 | 0.66 | 0.951904 |
Target: 5'- aCGuCAGCGUUGGccgccgCGGUGAAGUUg -3' miRNA: 3'- -GCuGUCGCAGCUcca---GCCACUUUAGg -5' |
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18413 | 3' | -52 | NC_004681.1 | + | 9301 | 0.66 | 0.942786 |
Target: 5'- -cACAGCGuUCGGGGUCuGGaacagggucagcUGGAuGUCCa -3' miRNA: 3'- gcUGUCGC-AGCUCCAG-CC------------ACUU-UAGG- -5' |
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18413 | 3' | -52 | NC_004681.1 | + | 45206 | 0.66 | 0.946096 |
Target: 5'- gCGACGGCGUCGGccccGGUcuugagcgagaccgCGGcGAGggCCu -3' miRNA: 3'- -GCUGUCGCAGCU----CCA--------------GCCaCUUuaGG- -5' |
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18413 | 3' | -52 | NC_004681.1 | + | 52037 | 0.66 | 0.951904 |
Target: 5'- uGugGGUGUCGAGGuauuccUCGacgcgcucccacGUGGAGUUCu -3' miRNA: 3'- gCugUCGCAGCUCC------AGC------------CACUUUAGG- -5' |
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18413 | 3' | -52 | NC_004681.1 | + | 4913 | 0.66 | 0.942786 |
Target: 5'- uGGCAGCcauGUCGcGGUCGGguuuGUCa -3' miRNA: 3'- gCUGUCG---CAGCuCCAGCCacuuUAGg -5' |
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18413 | 3' | -52 | NC_004681.1 | + | 6896 | 0.71 | 0.745898 |
Target: 5'- uCGACGGgGUUGAGaGcaccgCGGUGAAG-CCg -3' miRNA: 3'- -GCUGUCgCAGCUC-Ca----GCCACUUUaGG- -5' |
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18413 | 3' | -52 | NC_004681.1 | + | 34096 | 0.72 | 0.661224 |
Target: 5'- aCGACGggcacaccuGCGUaccCGAGGUCGGUGAcaaCCu -3' miRNA: 3'- -GCUGU---------CGCA---GCUCCAGCCACUuuaGG- -5' |
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18413 | 3' | -52 | NC_004681.1 | + | 51357 | 0.72 | 0.661224 |
Target: 5'- aGACGGUggcgugGUUGGGG-CGGUaGAAGUCCu -3' miRNA: 3'- gCUGUCG------CAGCUCCaGCCA-CUUUAGG- -5' |
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18413 | 3' | -52 | NC_004681.1 | + | 7193 | 0.73 | 0.650412 |
Target: 5'- aCGAugcCAGCGUUGAGGaguuccCGGUGggGggugCCg -3' miRNA: 3'- -GCU---GUCGCAGCUCCa-----GCCACuuUa---GG- -5' |
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18413 | 3' | -52 | NC_004681.1 | + | 53814 | 0.73 | 0.650412 |
Target: 5'- gGAUGGCGaCGAGGUCGGcGAcGGUCa -3' miRNA: 3'- gCUGUCGCaGCUCCAGCCaCU-UUAGg -5' |
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18413 | 3' | -52 | NC_004681.1 | + | 9069 | 0.77 | 0.422925 |
Target: 5'- cCGACAGCGagGAGGccgaggaggCGGUGAAG-CCg -3' miRNA: 3'- -GCUGUCGCagCUCCa--------GCCACUUUaGG- -5' |
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18413 | 3' | -52 | NC_004681.1 | + | 52640 | 0.81 | 0.248034 |
Target: 5'- gCGAUAGCGUCGaAGGcugccucggccaagUCGGUGAGGUCg -3' miRNA: 3'- -GCUGUCGCAGC-UCC--------------AGCCACUUUAGg -5' |
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18413 | 3' | -52 | NC_004681.1 | + | 32014 | 0.67 | 0.902504 |
Target: 5'- uCGGCgccgcgGGUGUCGGcacGGcCGGUGuGAUCCu -3' miRNA: 3'- -GCUG------UCGCAGCU---CCaGCCACuUUAGG- -5' |
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18413 | 3' | -52 | NC_004681.1 | + | 53638 | 0.75 | 0.511621 |
Target: 5'- aCGACGGCGcCcuGGUCGGUGucgucAUCCa -3' miRNA: 3'- -GCUGUCGCaGcuCCAGCCACuu---UAGG- -5' |
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18413 | 3' | -52 | NC_004681.1 | + | 17903 | 0.68 | 0.895689 |
Target: 5'- gCGGCGGCGgCGAGGgucCGGUacucaaGcgGUCCc -3' miRNA: 3'- -GCUGUCGCaGCUCCa--GCCA------CuuUAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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