miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18413 5' -59.2 NC_004681.1 + 59956 0.67 0.573639
Target:  5'- cGAGGAUg-UCCCGGCaGUCGccgaGGUGGAUc -3'
miRNA:   3'- -CUCCUGgaGGGGCUG-CAGC----UCACCUG- -5'
18413 5' -59.2 NC_004681.1 + 46097 0.67 0.552101
Target:  5'- cGAGGACCgcCCaCCGAUcauugaaGuUCGGGUGGAg -3'
miRNA:   3'- -CUCCUGGa-GG-GGCUG-------C-AGCUCACCUg -5'
18413 5' -59.2 NC_004681.1 + 51101 0.67 0.552101
Target:  5'- gGAaGAgCUCCCCGACGUCGAcgccgGUGuuccauuGACg -3'
miRNA:   3'- -CUcCUgGAGGGGCUGCAGCU-----CAC-------CUG- -5'
18413 5' -59.2 NC_004681.1 + 7825 0.67 0.542944
Target:  5'- cGGGGACCUCCaCCu-CGaUG-GUGGACu -3'
miRNA:   3'- -CUCCUGGAGG-GGcuGCaGCuCACCUG- -5'
18413 5' -59.2 NC_004681.1 + 6986 0.67 0.532829
Target:  5'- -cGGACaugCCguggUCGACGUCGAGcgGGACu -3'
miRNA:   3'- cuCCUGga-GG----GGCUGCAGCUCa-CCUG- -5'
18413 5' -59.2 NC_004681.1 + 39178 0.67 0.528802
Target:  5'- -cGGGCCgcggagaugcucgCCCuCGACGUCGA--GGACg -3'
miRNA:   3'- cuCCUGGa------------GGG-GCUGCAGCUcaCCUG- -5'
18413 5' -59.2 NC_004681.1 + 44841 0.67 0.519782
Target:  5'- cGAGGGagUCCUCGACGUCGAaggcgccgcaggugGUGGugACg -3'
miRNA:   3'- -CUCCUggAGGGGCUGCAGCU--------------CACC--UG- -5'
18413 5' -59.2 NC_004681.1 + 62363 0.68 0.512809
Target:  5'- cGGuGAUCUugcCCCCGGCG-CG-GUGGACg -3'
miRNA:   3'- cUC-CUGGA---GGGGCUGCaGCuCACCUG- -5'
18413 5' -59.2 NC_004681.1 + 10557 0.68 0.483384
Target:  5'- gGAGGAauCCUCCaCgGACGUCcAGUGGu- -3'
miRNA:   3'- -CUCCU--GGAGG-GgCUGCAGcUCACCug -5'
18413 5' -59.2 NC_004681.1 + 39292 0.68 0.473756
Target:  5'- --uGACgUCCUCGACGUCGA--GGGCg -3'
miRNA:   3'- cucCUGgAGGGGCUGCAGCUcaCCUG- -5'
18413 5' -59.2 NC_004681.1 + 45342 0.69 0.409278
Target:  5'- aAGGGCCgCUCCGACGUCGAGc---- -3'
miRNA:   3'- cUCCUGGaGGGGCUGCAGCUCaccug -5'
18413 5' -59.2 NC_004681.1 + 32684 0.7 0.39965
Target:  5'- cGGGuACC-CCgCCGACGUCGcgcggcuGGUGGAUg -3'
miRNA:   3'- cUCC-UGGaGG-GGCUGCAGC-------UCACCUG- -5'
18413 5' -59.2 NC_004681.1 + 27203 0.7 0.383366
Target:  5'- uGAGcuuGCCUCCaCCGG-GUgCGAGUGGACg -3'
miRNA:   3'- -CUCc--UGGAGG-GGCUgCA-GCUCACCUG- -5'
18413 5' -59.2 NC_004681.1 + 10709 0.7 0.374974
Target:  5'- aGGGaGACgUCCgUGACGUgGuAGUGGACa -3'
miRNA:   3'- -CUC-CUGgAGGgGCUGCAgC-UCACCUG- -5'
18413 5' -59.2 NC_004681.1 + 63477 0.7 0.369999
Target:  5'- aGGGGAagauacucaCUCCCCGcccacacaauggggcACuUCGAGUGGACa -3'
miRNA:   3'- -CUCCUg--------GAGGGGC---------------UGcAGCUCACCUG- -5'
18413 5' -59.2 NC_004681.1 + 57649 0.7 0.366708
Target:  5'- aAGGACCUCgCCGACa--GGGuUGGACu -3'
miRNA:   3'- cUCCUGGAGgGGCUGcagCUC-ACCUG- -5'
18413 5' -59.2 NC_004681.1 + 832 0.7 0.366708
Target:  5'- uGGGACCUCCCgGACGauccccUUGAGgaccUGGAUu -3'
miRNA:   3'- cUCCUGGAGGGgCUGC------AGCUC----ACCUG- -5'
18413 5' -59.2 NC_004681.1 + 10186 0.76 0.168364
Target:  5'- --cGGCCUCCCCGGCucCGAGUGGAg -3'
miRNA:   3'- cucCUGGAGGGGCUGcaGCUCACCUg -5'
18413 5' -59.2 NC_004681.1 + 22372 1.1 0.000617
Target:  5'- cGAGGACCUCCCCGACGUCGAGUGGACg -3'
miRNA:   3'- -CUCCUGGAGGGGCUGCAGCUCACCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.