miRNA display CGI


Results 1 - 20 of 61 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18415 3' -60 NC_004681.1 + 7598 0.66 0.583966
Target:  5'- cGCA-CCCaggcccaGGCAUCGACCGgagcGUCCGAa -3'
miRNA:   3'- -CGUaGGGg------CCGUGGCUGGU----CGGGUUc -5'
18415 3' -60 NC_004681.1 + 54831 0.66 0.583966
Target:  5'- aCAUCCCCu---UCGACCAGCUCAu- -3'
miRNA:   3'- cGUAGGGGccguGGCUGGUCGGGUuc -5'
18415 3' -60 NC_004681.1 + 42326 0.66 0.582932
Target:  5'- cCAUCCCCGcccacgcGCAgCGcuccaaugccACCAGCCgCAAGu -3'
miRNA:   3'- cGUAGGGGC-------CGUgGC----------UGGUCGG-GUUC- -5'
18415 3' -60 NC_004681.1 + 25089 0.66 0.573639
Target:  5'- aGCcUCCUCGGCACCucgguuGGCCgcGGaCCCAc- -3'
miRNA:   3'- -CGuAGGGGCCGUGG------CUGG--UC-GGGUuc -5'
18415 3' -60 NC_004681.1 + 12898 0.66 0.573639
Target:  5'- aCAcCCacaCCGGCuucguGCCGACCAGCCgCAc- -3'
miRNA:   3'- cGUaGG---GGCCG-----UGGCUGGUCGG-GUuc -5'
18415 3' -60 NC_004681.1 + 44642 0.66 0.573639
Target:  5'- -gGUCUacaCCGacuGCACCGugCAGgCCAAGg -3'
miRNA:   3'- cgUAGG---GGC---CGUGGCugGUCgGGUUC- -5'
18415 3' -60 NC_004681.1 + 12341 0.66 0.553122
Target:  5'- aGCA--CCgGGCcacCCGACuCAGCCCAGa -3'
miRNA:   3'- -CGUagGGgCCGu--GGCUG-GUCGGGUUc -5'
18415 3' -60 NC_004681.1 + 29698 0.66 0.553122
Target:  5'- ---aCCCUGGCGuaggUCGACCGGCCg--- -3'
miRNA:   3'- cguaGGGGCCGU----GGCUGGUCGGguuc -5'
18415 3' -60 NC_004681.1 + 24636 0.66 0.553122
Target:  5'- uGCAUCCCgCGacaaCACCGcggaccccgacaACCcGCCCGAGc -3'
miRNA:   3'- -CGUAGGG-GCc---GUGGC------------UGGuCGGGUUC- -5'
18415 3' -60 NC_004681.1 + 14906 0.66 0.553122
Target:  5'- ---cCCUCGGUACgGGCCAGCUgGGc -3'
miRNA:   3'- cguaGGGGCCGUGgCUGGUCGGgUUc -5'
18415 3' -60 NC_004681.1 + 40109 0.66 0.542944
Target:  5'- uGCA-CCCCGGggguCGCCaggucgguGACC-GCCCGGGa -3'
miRNA:   3'- -CGUaGGGGCC----GUGG--------CUGGuCGGGUUC- -5'
18415 3' -60 NC_004681.1 + 32112 0.66 0.542944
Target:  5'- gGCAUCCaggaagCGGuCACCGcGgCGGCCCAc- -3'
miRNA:   3'- -CGUAGGg-----GCC-GUGGC-UgGUCGGGUuc -5'
18415 3' -60 NC_004681.1 + 32865 0.66 0.542944
Target:  5'- aGCggCCCagCGGauuGCCGACCGGgCCGAa -3'
miRNA:   3'- -CGuaGGG--GCCg--UGGCUGGUCgGGUUc -5'
18415 3' -60 NC_004681.1 + 10385 0.66 0.536867
Target:  5'- aGUGUCgCUGGCACCucgcuguccaaggcuGACCAGgCCAu- -3'
miRNA:   3'- -CGUAGgGGCCGUGG---------------CUGGUCgGGUuc -5'
18415 3' -60 NC_004681.1 + 32999 0.66 0.532829
Target:  5'- aGCuaCCCCGGUAgCGGCCuGCCg--- -3'
miRNA:   3'- -CGuaGGGGCCGUgGCUGGuCGGguuc -5'
18415 3' -60 NC_004681.1 + 11976 0.66 0.532829
Target:  5'- -aGUCCCCuccgugGGCACCG-CUGGCUaCAAGg -3'
miRNA:   3'- cgUAGGGG------CCGUGGCuGGUCGG-GUUC- -5'
18415 3' -60 NC_004681.1 + 64353 0.66 0.532829
Target:  5'- --uUCCUCGGCGgUGugCGGUUCGGGg -3'
miRNA:   3'- cguAGGGGCCGUgGCugGUCGGGUUC- -5'
18415 3' -60 NC_004681.1 + 40223 0.67 0.522782
Target:  5'- -uGUCCCgGGCggucACCGACCuggcgaccCCCGGGg -3'
miRNA:   3'- cgUAGGGgCCG----UGGCUGGuc------GGGUUC- -5'
18415 3' -60 NC_004681.1 + 20091 0.67 0.512809
Target:  5'- aGCAauggaCCCGGCGCCGA---GCCCAc- -3'
miRNA:   3'- -CGUag---GGGCCGUGGCUgguCGGGUuc -5'
18415 3' -60 NC_004681.1 + 60051 0.67 0.512809
Target:  5'- cGCA--CCUGGCACCGGCUgaccguGGCCauCGAGg -3'
miRNA:   3'- -CGUagGGGCCGUGGCUGG------UCGG--GUUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.