Results 1 - 20 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18415 | 3' | -60 | NC_004681.1 | + | 22670 | 1.11 | 0.000392 |
Target: 5'- cGCAUCCCCGGCACCGACCAGCCCAAGg -3' miRNA: 3'- -CGUAGGGGCCGUGGCUGGUCGGGUUC- -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 18099 | 0.82 | 0.051566 |
Target: 5'- gGCAUCCCCGGCAucggcgcccCCGGCCAGgCaCCGGGu -3' miRNA: 3'- -CGUAGGGGCCGU---------GGCUGGUC-G-GGUUC- -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 21269 | 0.77 | 0.119722 |
Target: 5'- gGC-UCCCUGGCgACCc-CCAGCCCAAGg -3' miRNA: 3'- -CGuAGGGGCCG-UGGcuGGUCGGGUUC- -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 9092 | 0.73 | 0.211765 |
Target: 5'- cGCGUCgucaCCGGCGCCG-CUGGCUCGGGc -3' miRNA: 3'- -CGUAGg---GGCCGUGGCuGGUCGGGUUC- -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 6405 | 0.72 | 0.251891 |
Target: 5'- ---gCCCCGGCGCCGAagcgaCCGGCCa--- -3' miRNA: 3'- cguaGGGGCCGUGGCU-----GGUCGGguuc -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 37140 | 0.72 | 0.264453 |
Target: 5'- cGC-UCCCCGGUGCUuggcauguaGAUCGGUCCAGGc -3' miRNA: 3'- -CGuAGGGGCCGUGG---------CUGGUCGGGUUC- -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 16793 | 0.72 | 0.270922 |
Target: 5'- gGCAUCCCCGGCAU------GCCCGAGg -3' miRNA: 3'- -CGUAGGGGCCGUGgcugguCGGGUUC- -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 32102 | 0.71 | 0.298073 |
Target: 5'- ---aCCCgCGGCGCCGAUCAGCgagCCGAu -3' miRNA: 3'- cguaGGG-GCCGUGGCUGGUCG---GGUUc -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 10187 | 0.71 | 0.291093 |
Target: 5'- gGCcUCCCCGGCuccgaguggagcACCGGCCacaccuGGCCCuGGc -3' miRNA: 3'- -CGuAGGGGCCG------------UGGCUGG------UCGGGuUC- -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 16685 | 0.7 | 0.334914 |
Target: 5'- gGCG-CUCCGaGCACCGGCCuguuCCCGGGu -3' miRNA: 3'- -CGUaGGGGC-CGUGGCUGGuc--GGGUUC- -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 45954 | 0.69 | 0.383366 |
Target: 5'- -gGUCCCCGGCGCaaauGAUgGGCUCGu- -3' miRNA: 3'- cgUAGGGGCCGUGg---CUGgUCGGGUuc -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 24201 | 0.69 | 0.365888 |
Target: 5'- gGCGUCCgccaggCUGGCGCCGgaaccuuGCUGGCCCAc- -3' miRNA: 3'- -CGUAGG------GGCCGUGGC-------UGGUCGGGUuc -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 66939 | 0.69 | 0.409278 |
Target: 5'- gGCggCCCUGGUGCCGcgcGCCgAGCUCGAa -3' miRNA: 3'- -CGuaGGGGCCGUGGC---UGG-UCGGGUUc -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 39895 | 0.69 | 0.383366 |
Target: 5'- gGCGgagacCCCCaGCGCgCGGCCAGCUgcgCAAGg -3' miRNA: 3'- -CGUa----GGGGcCGUG-GCUGGUCGG---GUUC- -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 75601 | 0.69 | 0.383366 |
Target: 5'- cCAUCUCgGGCACCGuaGCUAGUCCu-- -3' miRNA: 3'- cGUAGGGgCCGUGGC--UGGUCGGGuuc -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 2858 | 0.69 | 0.382521 |
Target: 5'- cCGUCCCCgaGGCGCuCGACCgugacgaAGCCCc-- -3' miRNA: 3'- cGUAGGGG--CCGUG-GCUGG-------UCGGGuuc -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 19828 | 0.69 | 0.380835 |
Target: 5'- cGCGgugaCCCCGGCuuCGAggugcuguccuacaCCgAGCCCAAGa -3' miRNA: 3'- -CGUa---GGGGCCGugGCU--------------GG-UCGGGUUC- -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 51744 | 0.69 | 0.374974 |
Target: 5'- gGCcgCCCCGGCGCgGgcaagaguaacGCCGGUCUGAa -3' miRNA: 3'- -CGuaGGGGCCGUGgC-----------UGGUCGGGUUc -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 12220 | 0.69 | 0.374974 |
Target: 5'- cGCAUCCCCGGUggcccguucuggGCUGAgUcggguGGCCCGGu -3' miRNA: 3'- -CGUAGGGGCCG------------UGGCUgG-----UCGGGUUc -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 47021 | 0.69 | 0.366708 |
Target: 5'- cCAUCCCC---ACCGACgAGCCCGAc -3' miRNA: 3'- cGUAGGGGccgUGGCUGgUCGGGUUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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