miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18415 3' -60 NC_004681.1 + 22670 1.11 0.000392
Target:  5'- cGCAUCCCCGGCACCGACCAGCCCAAGg -3'
miRNA:   3'- -CGUAGGGGCCGUGGCUGGUCGGGUUC- -5'
18415 3' -60 NC_004681.1 + 18099 0.82 0.051566
Target:  5'- gGCAUCCCCGGCAucggcgcccCCGGCCAGgCaCCGGGu -3'
miRNA:   3'- -CGUAGGGGCCGU---------GGCUGGUC-G-GGUUC- -5'
18415 3' -60 NC_004681.1 + 21269 0.77 0.119722
Target:  5'- gGC-UCCCUGGCgACCc-CCAGCCCAAGg -3'
miRNA:   3'- -CGuAGGGGCCG-UGGcuGGUCGGGUUC- -5'
18415 3' -60 NC_004681.1 + 9092 0.73 0.211765
Target:  5'- cGCGUCgucaCCGGCGCCG-CUGGCUCGGGc -3'
miRNA:   3'- -CGUAGg---GGCCGUGGCuGGUCGGGUUC- -5'
18415 3' -60 NC_004681.1 + 6405 0.72 0.251891
Target:  5'- ---gCCCCGGCGCCGAagcgaCCGGCCa--- -3'
miRNA:   3'- cguaGGGGCCGUGGCU-----GGUCGGguuc -5'
18415 3' -60 NC_004681.1 + 37140 0.72 0.264453
Target:  5'- cGC-UCCCCGGUGCUuggcauguaGAUCGGUCCAGGc -3'
miRNA:   3'- -CGuAGGGGCCGUGG---------CUGGUCGGGUUC- -5'
18415 3' -60 NC_004681.1 + 16793 0.72 0.270922
Target:  5'- gGCAUCCCCGGCAU------GCCCGAGg -3'
miRNA:   3'- -CGUAGGGGCCGUGgcugguCGGGUUC- -5'
18415 3' -60 NC_004681.1 + 10187 0.71 0.291093
Target:  5'- gGCcUCCCCGGCuccgaguggagcACCGGCCacaccuGGCCCuGGc -3'
miRNA:   3'- -CGuAGGGGCCG------------UGGCUGG------UCGGGuUC- -5'
18415 3' -60 NC_004681.1 + 32102 0.71 0.298073
Target:  5'- ---aCCCgCGGCGCCGAUCAGCgagCCGAu -3'
miRNA:   3'- cguaGGG-GCCGUGGCUGGUCG---GGUUc -5'
18415 3' -60 NC_004681.1 + 16685 0.7 0.334914
Target:  5'- gGCG-CUCCGaGCACCGGCCuguuCCCGGGu -3'
miRNA:   3'- -CGUaGGGGC-CGUGGCUGGuc--GGGUUC- -5'
18415 3' -60 NC_004681.1 + 24201 0.69 0.365888
Target:  5'- gGCGUCCgccaggCUGGCGCCGgaaccuuGCUGGCCCAc- -3'
miRNA:   3'- -CGUAGG------GGCCGUGGC-------UGGUCGGGUuc -5'
18415 3' -60 NC_004681.1 + 47021 0.69 0.366708
Target:  5'- cCAUCCCC---ACCGACgAGCCCGAc -3'
miRNA:   3'- cGUAGGGGccgUGGCUGgUCGGGUUc -5'
18415 3' -60 NC_004681.1 + 12220 0.69 0.374974
Target:  5'- cGCAUCCCCGGUggcccguucuggGCUGAgUcggguGGCCCGGu -3'
miRNA:   3'- -CGUAGGGGCCG------------UGGCUgG-----UCGGGUUc -5'
18415 3' -60 NC_004681.1 + 51744 0.69 0.374974
Target:  5'- gGCcgCCCCGGCGCgGgcaagaguaacGCCGGUCUGAa -3'
miRNA:   3'- -CGuaGGGGCCGUGgC-----------UGGUCGGGUUc -5'
18415 3' -60 NC_004681.1 + 19828 0.69 0.380835
Target:  5'- cGCGgugaCCCCGGCuuCGAggugcuguccuacaCCgAGCCCAAGa -3'
miRNA:   3'- -CGUa---GGGGCCGugGCU--------------GG-UCGGGUUC- -5'
18415 3' -60 NC_004681.1 + 2858 0.69 0.382521
Target:  5'- cCGUCCCCgaGGCGCuCGACCgugacgaAGCCCc-- -3'
miRNA:   3'- cGUAGGGG--CCGUG-GCUGG-------UCGGGuuc -5'
18415 3' -60 NC_004681.1 + 75601 0.69 0.383366
Target:  5'- cCAUCUCgGGCACCGuaGCUAGUCCu-- -3'
miRNA:   3'- cGUAGGGgCCGUGGC--UGGUCGGGuuc -5'
18415 3' -60 NC_004681.1 + 45954 0.69 0.383366
Target:  5'- -gGUCCCCGGCGCaaauGAUgGGCUCGu- -3'
miRNA:   3'- cgUAGGGGCCGUGg---CUGgUCGGGUuc -5'
18415 3' -60 NC_004681.1 + 39895 0.69 0.383366
Target:  5'- gGCGgagacCCCCaGCGCgCGGCCAGCUgcgCAAGg -3'
miRNA:   3'- -CGUa----GGGGcCGUG-GCUGGUCGG---GUUC- -5'
18415 3' -60 NC_004681.1 + 66939 0.69 0.409278
Target:  5'- gGCggCCCUGGUGCCGcgcGCCgAGCUCGAa -3'
miRNA:   3'- -CGuaGGGGCCGUGGC---UGG-UCGGGUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.