Results 21 - 40 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18415 | 3' | -60 | NC_004681.1 | + | 16307 | 0.68 | 0.417261 |
Target: 5'- gGCAUCCCCgcGGCcggaucgacggaaGCCGAgCAGgCCAu- -3' miRNA: 3'- -CGUAGGGG--CCG-------------UGGCUgGUCgGGUuc -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 22906 | 0.68 | 0.418154 |
Target: 5'- gGUcgCCCCGGCgauGCCGuaguAgCGGCCCAc- -3' miRNA: 3'- -CGuaGGGGCCG---UGGC----UgGUCGGGUuc -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 20091 | 0.68 | 0.418154 |
Target: 5'- -aGUgCCCGG-ACUGACCGGCCUGGa -3' miRNA: 3'- cgUAgGGGCCgUGGCUGGUCGGGUUc -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 30623 | 0.68 | 0.426242 |
Target: 5'- gGCGUCCCggcUGGUACCGGCCGuGgaucaucUCCAGGa -3' miRNA: 3'- -CGUAGGG---GCCGUGGCUGGU-C-------GGGUUC- -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 7307 | 0.68 | 0.427147 |
Target: 5'- cCGUUaCCGGCACCGGCC-GCCUucucGAGu -3' miRNA: 3'- cGUAGgGGCCGUGGCUGGuCGGG----UUC- -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 15560 | 0.68 | 0.427147 |
Target: 5'- -gAUCaCCGGCACCGACCAGggcaugaCCGu- -3' miRNA: 3'- cgUAGgGGCCGUGGCUGGUCg------GGUuc -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 51634 | 0.68 | 0.427147 |
Target: 5'- gGCGgaCCUGGCAa-GACCAGCCCu-- -3' miRNA: 3'- -CGUagGGGCCGUggCUGGUCGGGuuc -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 8578 | 0.68 | 0.436253 |
Target: 5'- ---cCCCCGGCauccuGCCGACCuuccuCCCGGGc -3' miRNA: 3'- cguaGGGGCCG-----UGGCUGGuc---GGGUUC- -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 16594 | 0.68 | 0.44547 |
Target: 5'- gGCGUCCCCGGU--CGACCuGCaacugCAGGc -3' miRNA: 3'- -CGUAGGGGCCGugGCUGGuCGg----GUUC- -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 50678 | 0.68 | 0.44547 |
Target: 5'- aGCAgagcuaCCCCGGCGuuGgguuucGCCAGCCaCAGc -3' miRNA: 3'- -CGUa-----GGGGCCGUggC------UGGUCGG-GUUc -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 19429 | 0.68 | 0.44547 |
Target: 5'- gGCGUCUgCGGCACCGA-UGGCaCCGu- -3' miRNA: 3'- -CGUAGGgGCCGUGGCUgGUCG-GGUuc -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 30468 | 0.68 | 0.44547 |
Target: 5'- aCGUCCaCCagGGCACCGACU-GCUCAGa -3' miRNA: 3'- cGUAGG-GG--CCGUGGCUGGuCGGGUUc -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 17404 | 0.68 | 0.464225 |
Target: 5'- aGCGUCCCgCgGGCACgCGcGCCAGCagggcgucgucuCCGGGa -3' miRNA: 3'- -CGUAGGG-G-CCGUG-GC-UGGUCG------------GGUUC- -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 14862 | 0.67 | 0.473756 |
Target: 5'- gGCGUCCgCGGCGuCaCGgaaACCGGCCUucGAGa -3' miRNA: 3'- -CGUAGGgGCCGU-G-GC---UGGUCGGG--UUC- -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 7151 | 0.67 | 0.473756 |
Target: 5'- uGCAgUCCaaGGCGCuCGAcacCCGcGCCCAGGa -3' miRNA: 3'- -CGU-AGGggCCGUG-GCU---GGU-CGGGUUC- -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 43375 | 0.67 | 0.483384 |
Target: 5'- aUAUCCCCGGCGC--GCaCAGUCCcuGAGa -3' miRNA: 3'- cGUAGGGGCCGUGgcUG-GUCGGG--UUC- -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 8654 | 0.67 | 0.483384 |
Target: 5'- --uUCCUcgCGGC-CCGucACCAGCCCGAa -3' miRNA: 3'- cguAGGG--GCCGuGGC--UGGUCGGGUUc -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 25596 | 0.67 | 0.502915 |
Target: 5'- gGCGUCCCCGcugAgCGACCAaCCCAGu -3' miRNA: 3'- -CGUAGGGGCcg-UgGCUGGUcGGGUUc -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 46844 | 0.67 | 0.502915 |
Target: 5'- gGCAaccgCCCCGGCACCccgauGAUCAaccgccuuGUCCGGGu -3' miRNA: 3'- -CGUa---GGGGCCGUGG-----CUGGU--------CGGGUUC- -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 46700 | 0.67 | 0.502915 |
Target: 5'- -gGUCCUCGGCGagUgGGCCGGUCUggGc -3' miRNA: 3'- cgUAGGGGCCGU--GgCUGGUCGGGuuC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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