Results 1 - 20 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18415 | 3' | -60 | NC_004681.1 | + | 7598 | 0.66 | 0.583966 |
Target: 5'- cGCA-CCCaggcccaGGCAUCGACCGgagcGUCCGAa -3' miRNA: 3'- -CGUaGGGg------CCGUGGCUGGU----CGGGUUc -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 54831 | 0.66 | 0.583966 |
Target: 5'- aCAUCCCCu---UCGACCAGCUCAu- -3' miRNA: 3'- cGUAGGGGccguGGCUGGUCGGGUuc -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 42326 | 0.66 | 0.582932 |
Target: 5'- cCAUCCCCGcccacgcGCAgCGcuccaaugccACCAGCCgCAAGu -3' miRNA: 3'- cGUAGGGGC-------CGUgGC----------UGGUCGG-GUUC- -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 25089 | 0.66 | 0.573639 |
Target: 5'- aGCcUCCUCGGCACCucgguuGGCCgcGGaCCCAc- -3' miRNA: 3'- -CGuAGGGGCCGUGG------CUGG--UC-GGGUuc -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 12898 | 0.66 | 0.573639 |
Target: 5'- aCAcCCacaCCGGCuucguGCCGACCAGCCgCAc- -3' miRNA: 3'- cGUaGG---GGCCG-----UGGCUGGUCGG-GUuc -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 44642 | 0.66 | 0.573639 |
Target: 5'- -gGUCUacaCCGacuGCACCGugCAGgCCAAGg -3' miRNA: 3'- cgUAGG---GGC---CGUGGCugGUCgGGUUC- -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 12341 | 0.66 | 0.553122 |
Target: 5'- aGCA--CCgGGCcacCCGACuCAGCCCAGa -3' miRNA: 3'- -CGUagGGgCCGu--GGCUG-GUCGGGUUc -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 29698 | 0.66 | 0.553122 |
Target: 5'- ---aCCCUGGCGuaggUCGACCGGCCg--- -3' miRNA: 3'- cguaGGGGCCGU----GGCUGGUCGGguuc -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 24636 | 0.66 | 0.553122 |
Target: 5'- uGCAUCCCgCGacaaCACCGcggaccccgacaACCcGCCCGAGc -3' miRNA: 3'- -CGUAGGG-GCc---GUGGC------------UGGuCGGGUUC- -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 14906 | 0.66 | 0.553122 |
Target: 5'- ---cCCUCGGUACgGGCCAGCUgGGc -3' miRNA: 3'- cguaGGGGCCGUGgCUGGUCGGgUUc -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 40109 | 0.66 | 0.542944 |
Target: 5'- uGCA-CCCCGGggguCGCCaggucgguGACC-GCCCGGGa -3' miRNA: 3'- -CGUaGGGGCC----GUGG--------CUGGuCGGGUUC- -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 32112 | 0.66 | 0.542944 |
Target: 5'- gGCAUCCaggaagCGGuCACCGcGgCGGCCCAc- -3' miRNA: 3'- -CGUAGGg-----GCC-GUGGC-UgGUCGGGUuc -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 32865 | 0.66 | 0.542944 |
Target: 5'- aGCggCCCagCGGauuGCCGACCGGgCCGAa -3' miRNA: 3'- -CGuaGGG--GCCg--UGGCUGGUCgGGUUc -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 10385 | 0.66 | 0.536867 |
Target: 5'- aGUGUCgCUGGCACCucgcuguccaaggcuGACCAGgCCAu- -3' miRNA: 3'- -CGUAGgGGCCGUGG---------------CUGGUCgGGUuc -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 32999 | 0.66 | 0.532829 |
Target: 5'- aGCuaCCCCGGUAgCGGCCuGCCg--- -3' miRNA: 3'- -CGuaGGGGCCGUgGCUGGuCGGguuc -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 11976 | 0.66 | 0.532829 |
Target: 5'- -aGUCCCCuccgugGGCACCG-CUGGCUaCAAGg -3' miRNA: 3'- cgUAGGGG------CCGUGGCuGGUCGG-GUUC- -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 64353 | 0.66 | 0.532829 |
Target: 5'- --uUCCUCGGCGgUGugCGGUUCGGGg -3' miRNA: 3'- cguAGGGGCCGUgGCugGUCGGGUUC- -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 40223 | 0.67 | 0.522782 |
Target: 5'- -uGUCCCgGGCggucACCGACCuggcgaccCCCGGGg -3' miRNA: 3'- cgUAGGGgCCG----UGGCUGGuc------GGGUUC- -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 20091 | 0.67 | 0.512809 |
Target: 5'- aGCAauggaCCCGGCGCCGA---GCCCAc- -3' miRNA: 3'- -CGUag---GGGCCGUGGCUgguCGGGUuc -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 60051 | 0.67 | 0.512809 |
Target: 5'- cGCA--CCUGGCACCGGCUgaccguGGCCauCGAGg -3' miRNA: 3'- -CGUagGGGCCGUGGCUGG------UCGG--GUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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