miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18415 3' -60 NC_004681.1 + 2858 0.69 0.382521
Target:  5'- cCGUCCCCgaGGCGCuCGACCgugacgaAGCCCc-- -3'
miRNA:   3'- cGUAGGGG--CCGUG-GCUGG-------UCGGGuuc -5'
18415 3' -60 NC_004681.1 + 6405 0.72 0.251891
Target:  5'- ---gCCCCGGCGCCGAagcgaCCGGCCa--- -3'
miRNA:   3'- cguaGGGGCCGUGGCU-----GGUCGGguuc -5'
18415 3' -60 NC_004681.1 + 6555 0.67 0.512809
Target:  5'- ---gUCCCGGCACCGAggcgggcggagaCUGGUCCAGa -3'
miRNA:   3'- cguaGGGGCCGUGGCU------------GGUCGGGUUc -5'
18415 3' -60 NC_004681.1 + 7151 0.67 0.473756
Target:  5'- uGCAgUCCaaGGCGCuCGAcacCCGcGCCCAGGa -3'
miRNA:   3'- -CGU-AGGggCCGUG-GCU---GGU-CGGGUUC- -5'
18415 3' -60 NC_004681.1 + 7307 0.68 0.427147
Target:  5'- cCGUUaCCGGCACCGGCC-GCCUucucGAGu -3'
miRNA:   3'- cGUAGgGGCCGUGGCUGGuCGGG----UUC- -5'
18415 3' -60 NC_004681.1 + 7598 0.66 0.583966
Target:  5'- cGCA-CCCaggcccaGGCAUCGACCGgagcGUCCGAa -3'
miRNA:   3'- -CGUaGGGg------CCGUGGCUGGU----CGGGUUc -5'
18415 3' -60 NC_004681.1 + 8578 0.68 0.436253
Target:  5'- ---cCCCCGGCauccuGCCGACCuuccuCCCGGGc -3'
miRNA:   3'- cguaGGGGCCG-----UGGCUGGuc---GGGUUC- -5'
18415 3' -60 NC_004681.1 + 8654 0.67 0.483384
Target:  5'- --uUCCUcgCGGC-CCGucACCAGCCCGAa -3'
miRNA:   3'- cguAGGG--GCCGuGGC--UGGUCGGGUUc -5'
18415 3' -60 NC_004681.1 + 9092 0.73 0.211765
Target:  5'- cGCGUCgucaCCGGCGCCG-CUGGCUCGGGc -3'
miRNA:   3'- -CGUAGg---GGCCGUGGCuGGUCGGGUUC- -5'
18415 3' -60 NC_004681.1 + 10187 0.71 0.291093
Target:  5'- gGCcUCCCCGGCuccgaguggagcACCGGCCacaccuGGCCCuGGc -3'
miRNA:   3'- -CGuAGGGGCCG------------UGGCUGG------UCGGGuUC- -5'
18415 3' -60 NC_004681.1 + 10385 0.66 0.536867
Target:  5'- aGUGUCgCUGGCACCucgcuguccaaggcuGACCAGgCCAu- -3'
miRNA:   3'- -CGUAGgGGCCGUGG---------------CUGGUCgGGUuc -5'
18415 3' -60 NC_004681.1 + 11976 0.66 0.532829
Target:  5'- -aGUCCCCuccgugGGCACCG-CUGGCUaCAAGg -3'
miRNA:   3'- cgUAGGGG------CCGUGGCuGGUCGG-GUUC- -5'
18415 3' -60 NC_004681.1 + 12220 0.69 0.374974
Target:  5'- cGCAUCCCCGGUggcccguucuggGCUGAgUcggguGGCCCGGu -3'
miRNA:   3'- -CGUAGGGGCCG------------UGGCUgG-----UCGGGUUc -5'
18415 3' -60 NC_004681.1 + 12341 0.66 0.553122
Target:  5'- aGCA--CCgGGCcacCCGACuCAGCCCAGa -3'
miRNA:   3'- -CGUagGGgCCGu--GGCUG-GUCGGGUUc -5'
18415 3' -60 NC_004681.1 + 12898 0.66 0.573639
Target:  5'- aCAcCCacaCCGGCuucguGCCGACCAGCCgCAc- -3'
miRNA:   3'- cGUaGG---GGCCG-----UGGCUGGUCGG-GUuc -5'
18415 3' -60 NC_004681.1 + 14862 0.67 0.473756
Target:  5'- gGCGUCCgCGGCGuCaCGgaaACCGGCCUucGAGa -3'
miRNA:   3'- -CGUAGGgGCCGU-G-GC---UGGUCGGG--UUC- -5'
18415 3' -60 NC_004681.1 + 14906 0.66 0.553122
Target:  5'- ---cCCUCGGUACgGGCCAGCUgGGc -3'
miRNA:   3'- cguaGGGGCCGUGgCUGGUCGGgUUc -5'
18415 3' -60 NC_004681.1 + 15560 0.68 0.427147
Target:  5'- -gAUCaCCGGCACCGACCAGggcaugaCCGu- -3'
miRNA:   3'- cgUAGgGGCCGUGGCUGGUCg------GGUuc -5'
18415 3' -60 NC_004681.1 + 16307 0.68 0.417261
Target:  5'- gGCAUCCCCgcGGCcggaucgacggaaGCCGAgCAGgCCAu- -3'
miRNA:   3'- -CGUAGGGG--CCG-------------UGGCUgGUCgGGUuc -5'
18415 3' -60 NC_004681.1 + 16594 0.68 0.44547
Target:  5'- gGCGUCCCCGGU--CGACCuGCaacugCAGGc -3'
miRNA:   3'- -CGUAGGGGCCGugGCUGGuCGg----GUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.