miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18415 3' -60 NC_004681.1 + 16685 0.7 0.334914
Target:  5'- gGCG-CUCCGaGCACCGGCCuguuCCCGGGu -3'
miRNA:   3'- -CGUaGGGGC-CGUGGCUGGuc--GGGUUC- -5'
18415 3' -60 NC_004681.1 + 16793 0.72 0.270922
Target:  5'- gGCAUCCCCGGCAU------GCCCGAGg -3'
miRNA:   3'- -CGUAGGGGCCGUGgcugguCGGGUUC- -5'
18415 3' -60 NC_004681.1 + 17404 0.68 0.464225
Target:  5'- aGCGUCCCgCgGGCACgCGcGCCAGCagggcgucgucuCCGGGa -3'
miRNA:   3'- -CGUAGGG-G-CCGUG-GC-UGGUCG------------GGUUC- -5'
18415 3' -60 NC_004681.1 + 18099 0.82 0.051566
Target:  5'- gGCAUCCCCGGCAucggcgcccCCGGCCAGgCaCCGGGu -3'
miRNA:   3'- -CGUAGGGGCCGU---------GGCUGGUC-G-GGUUC- -5'
18415 3' -60 NC_004681.1 + 19429 0.68 0.44547
Target:  5'- gGCGUCUgCGGCACCGA-UGGCaCCGu- -3'
miRNA:   3'- -CGUAGGgGCCGUGGCUgGUCG-GGUuc -5'
18415 3' -60 NC_004681.1 + 19828 0.69 0.380835
Target:  5'- cGCGgugaCCCCGGCuuCGAggugcuguccuacaCCgAGCCCAAGa -3'
miRNA:   3'- -CGUa---GGGGCCGugGCU--------------GG-UCGGGUUC- -5'
18415 3' -60 NC_004681.1 + 20091 0.68 0.418154
Target:  5'- -aGUgCCCGG-ACUGACCGGCCUGGa -3'
miRNA:   3'- cgUAgGGGCCgUGGCUGGUCGGGUUc -5'
18415 3' -60 NC_004681.1 + 20091 0.67 0.512809
Target:  5'- aGCAauggaCCCGGCGCCGA---GCCCAc- -3'
miRNA:   3'- -CGUag---GGGCCGUGGCUgguCGGGUuc -5'
18415 3' -60 NC_004681.1 + 21269 0.77 0.119722
Target:  5'- gGC-UCCCUGGCgACCc-CCAGCCCAAGg -3'
miRNA:   3'- -CGuAGGGGCCG-UGGcuGGUCGGGUUC- -5'
18415 3' -60 NC_004681.1 + 22670 1.11 0.000392
Target:  5'- cGCAUCCCCGGCACCGACCAGCCCAAGg -3'
miRNA:   3'- -CGUAGGGGCCGUGGCUGGUCGGGUUC- -5'
18415 3' -60 NC_004681.1 + 22906 0.68 0.418154
Target:  5'- gGUcgCCCCGGCgauGCCGuaguAgCGGCCCAc- -3'
miRNA:   3'- -CGuaGGGGCCG---UGGC----UgGUCGGGUuc -5'
18415 3' -60 NC_004681.1 + 24201 0.69 0.365888
Target:  5'- gGCGUCCgccaggCUGGCGCCGgaaccuuGCUGGCCCAc- -3'
miRNA:   3'- -CGUAGG------GGCCGUGGC-------UGGUCGGGUuc -5'
18415 3' -60 NC_004681.1 + 24636 0.66 0.553122
Target:  5'- uGCAUCCCgCGacaaCACCGcggaccccgacaACCcGCCCGAGc -3'
miRNA:   3'- -CGUAGGG-GCc---GUGGC------------UGGuCGGGUUC- -5'
18415 3' -60 NC_004681.1 + 25089 0.66 0.573639
Target:  5'- aGCcUCCUCGGCACCucgguuGGCCgcGGaCCCAc- -3'
miRNA:   3'- -CGuAGGGGCCGUGG------CUGG--UC-GGGUuc -5'
18415 3' -60 NC_004681.1 + 25596 0.67 0.502915
Target:  5'- gGCGUCCCCGcugAgCGACCAaCCCAGu -3'
miRNA:   3'- -CGUAGGGGCcg-UgGCUGGUcGGGUUc -5'
18415 3' -60 NC_004681.1 + 29698 0.66 0.553122
Target:  5'- ---aCCCUGGCGuaggUCGACCGGCCg--- -3'
miRNA:   3'- cguaGGGGCCGU----GGCUGGUCGGguuc -5'
18415 3' -60 NC_004681.1 + 30468 0.68 0.44547
Target:  5'- aCGUCCaCCagGGCACCGACU-GCUCAGa -3'
miRNA:   3'- cGUAGG-GG--CCGUGGCUGGuCGGGUUc -5'
18415 3' -60 NC_004681.1 + 30623 0.68 0.426242
Target:  5'- gGCGUCCCggcUGGUACCGGCCGuGgaucaucUCCAGGa -3'
miRNA:   3'- -CGUAGGG---GCCGUGGCUGGU-C-------GGGUUC- -5'
18415 3' -60 NC_004681.1 + 32102 0.71 0.298073
Target:  5'- ---aCCCgCGGCGCCGAUCAGCgagCCGAu -3'
miRNA:   3'- cguaGGG-GCCGUGGCUGGUCG---GGUUc -5'
18415 3' -60 NC_004681.1 + 32112 0.66 0.542944
Target:  5'- gGCAUCCaggaagCGGuCACCGcGgCGGCCCAc- -3'
miRNA:   3'- -CGUAGGg-----GCC-GUGGC-UgGUCGGGUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.