miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18415 3' -60 NC_004681.1 + 75601 0.69 0.383366
Target:  5'- cCAUCUCgGGCACCGuaGCUAGUCCu-- -3'
miRNA:   3'- cGUAGGGgCCGUGGC--UGGUCGGGuuc -5'
18415 3' -60 NC_004681.1 + 66939 0.69 0.409278
Target:  5'- gGCggCCCUGGUGCCGcgcGCCgAGCUCGAa -3'
miRNA:   3'- -CGuaGGGGCCGUGGC---UGG-UCGGGUUc -5'
18415 3' -60 NC_004681.1 + 64353 0.66 0.532829
Target:  5'- --uUCCUCGGCGgUGugCGGUUCGGGg -3'
miRNA:   3'- cguAGGGGCCGUgGCugGUCGGGUUC- -5'
18415 3' -60 NC_004681.1 + 60051 0.67 0.512809
Target:  5'- cGCA--CCUGGCACCGGCUgaccguGGCCauCGAGg -3'
miRNA:   3'- -CGUagGGGCCGUGGCUGG------UCGG--GUUC- -5'
18415 3' -60 NC_004681.1 + 54831 0.66 0.583966
Target:  5'- aCAUCCCCu---UCGACCAGCUCAu- -3'
miRNA:   3'- cGUAGGGGccguGGCUGGUCGGGUuc -5'
18415 3' -60 NC_004681.1 + 51744 0.69 0.374974
Target:  5'- gGCcgCCCCGGCGCgGgcaagaguaacGCCGGUCUGAa -3'
miRNA:   3'- -CGuaGGGGCCGUGgC-----------UGGUCGGGUUc -5'
18415 3' -60 NC_004681.1 + 51634 0.68 0.427147
Target:  5'- gGCGgaCCUGGCAa-GACCAGCCCu-- -3'
miRNA:   3'- -CGUagGGGCCGUggCUGGUCGGGuuc -5'
18415 3' -60 NC_004681.1 + 50678 0.68 0.44547
Target:  5'- aGCAgagcuaCCCCGGCGuuGgguuucGCCAGCCaCAGc -3'
miRNA:   3'- -CGUa-----GGGGCCGUggC------UGGUCGG-GUUc -5'
18415 3' -60 NC_004681.1 + 47021 0.69 0.366708
Target:  5'- cCAUCCCC---ACCGACgAGCCCGAc -3'
miRNA:   3'- cGUAGGGGccgUGGCUGgUCGGGUUc -5'
18415 3' -60 NC_004681.1 + 46844 0.67 0.502915
Target:  5'- gGCAaccgCCCCGGCACCccgauGAUCAaccgccuuGUCCGGGu -3'
miRNA:   3'- -CGUa---GGGGCCGUGG-----CUGGU--------CGGGUUC- -5'
18415 3' -60 NC_004681.1 + 46700 0.67 0.502915
Target:  5'- -gGUCCUCGGCGagUgGGCCGGUCUggGc -3'
miRNA:   3'- cgUAGGGGCCGU--GgCUGGUCGGGuuC- -5'
18415 3' -60 NC_004681.1 + 45954 0.69 0.383366
Target:  5'- -gGUCCCCGGCGCaaauGAUgGGCUCGu- -3'
miRNA:   3'- cgUAGGGGCCGUGg---CUGgUCGGGUuc -5'
18415 3' -60 NC_004681.1 + 44642 0.66 0.573639
Target:  5'- -gGUCUacaCCGacuGCACCGugCAGgCCAAGg -3'
miRNA:   3'- cgUAGG---GGC---CGUGGCugGUCgGGUUC- -5'
18415 3' -60 NC_004681.1 + 43375 0.67 0.483384
Target:  5'- aUAUCCCCGGCGC--GCaCAGUCCcuGAGa -3'
miRNA:   3'- cGUAGGGGCCGUGgcUG-GUCGGG--UUC- -5'
18415 3' -60 NC_004681.1 + 42326 0.66 0.582932
Target:  5'- cCAUCCCCGcccacgcGCAgCGcuccaaugccACCAGCCgCAAGu -3'
miRNA:   3'- cGUAGGGGC-------CGUgGC----------UGGUCGG-GUUC- -5'
18415 3' -60 NC_004681.1 + 40223 0.67 0.522782
Target:  5'- -uGUCCCgGGCggucACCGACCuggcgaccCCCGGGg -3'
miRNA:   3'- cgUAGGGgCCG----UGGCUGGuc------GGGUUC- -5'
18415 3' -60 NC_004681.1 + 40109 0.66 0.542944
Target:  5'- uGCA-CCCCGGggguCGCCaggucgguGACC-GCCCGGGa -3'
miRNA:   3'- -CGUaGGGGCC----GUGG--------CUGGuCGGGUUC- -5'
18415 3' -60 NC_004681.1 + 39895 0.69 0.383366
Target:  5'- gGCGgagacCCCCaGCGCgCGGCCAGCUgcgCAAGg -3'
miRNA:   3'- -CGUa----GGGGcCGUG-GCUGGUCGG---GUUC- -5'
18415 3' -60 NC_004681.1 + 37140 0.72 0.264453
Target:  5'- cGC-UCCCCGGUGCUuggcauguaGAUCGGUCCAGGc -3'
miRNA:   3'- -CGuAGGGGCCGUGG---------CUGGUCGGGUUC- -5'
18415 3' -60 NC_004681.1 + 32999 0.66 0.532829
Target:  5'- aGCuaCCCCGGUAgCGGCCuGCCg--- -3'
miRNA:   3'- -CGuaGGGGCCGUgGCUGGuCGGguuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.