miRNA display CGI


Results 41 - 60 of 61 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18415 3' -60 NC_004681.1 + 19828 0.69 0.380835
Target:  5'- cGCGgugaCCCCGGCuuCGAggugcuguccuacaCCgAGCCCAAGa -3'
miRNA:   3'- -CGUa---GGGGCCGugGCU--------------GG-UCGGGUUC- -5'
18415 3' -60 NC_004681.1 + 51744 0.69 0.374974
Target:  5'- gGCcgCCCCGGCGCgGgcaagaguaacGCCGGUCUGAa -3'
miRNA:   3'- -CGuaGGGGCCGUGgC-----------UGGUCGGGUUc -5'
18415 3' -60 NC_004681.1 + 46700 0.67 0.502915
Target:  5'- -gGUCCUCGGCGagUgGGCCGGUCUggGc -3'
miRNA:   3'- cgUAGGGGCCGU--GgCUGGUCGGGuuC- -5'
18415 3' -60 NC_004681.1 + 25596 0.67 0.502915
Target:  5'- gGCGUCCCCGcugAgCGACCAaCCCAGu -3'
miRNA:   3'- -CGUAGGGGCcg-UgGCUGGUcGGGUUc -5'
18415 3' -60 NC_004681.1 + 6555 0.67 0.512809
Target:  5'- ---gUCCCGGCACCGAggcgggcggagaCUGGUCCAGa -3'
miRNA:   3'- cguaGGGGCCGUGGCU------------GGUCGGGUUc -5'
18415 3' -60 NC_004681.1 + 40223 0.67 0.522782
Target:  5'- -uGUCCCgGGCggucACCGACCuggcgaccCCCGGGg -3'
miRNA:   3'- cgUAGGGgCCG----UGGCUGGuc------GGGUUC- -5'
18415 3' -60 NC_004681.1 + 64353 0.66 0.532829
Target:  5'- --uUCCUCGGCGgUGugCGGUUCGGGg -3'
miRNA:   3'- cguAGGGGCCGUgGCugGUCGGGUUC- -5'
18415 3' -60 NC_004681.1 + 32865 0.66 0.542944
Target:  5'- aGCggCCCagCGGauuGCCGACCGGgCCGAa -3'
miRNA:   3'- -CGuaGGG--GCCg--UGGCUGGUCgGGUUc -5'
18415 3' -60 NC_004681.1 + 12341 0.66 0.553122
Target:  5'- aGCA--CCgGGCcacCCGACuCAGCCCAGa -3'
miRNA:   3'- -CGUagGGgCCGu--GGCUG-GUCGGGUUc -5'
18415 3' -60 NC_004681.1 + 14906 0.66 0.553122
Target:  5'- ---cCCUCGGUACgGGCCAGCUgGGc -3'
miRNA:   3'- cguaGGGGCCGUGgCUGGUCGGgUUc -5'
18415 3' -60 NC_004681.1 + 14862 0.67 0.473756
Target:  5'- gGCGUCCgCGGCGuCaCGgaaACCGGCCUucGAGa -3'
miRNA:   3'- -CGUAGGgGCCGU-G-GC---UGGUCGGG--UUC- -5'
18415 3' -60 NC_004681.1 + 17404 0.68 0.464225
Target:  5'- aGCGUCCCgCgGGCACgCGcGCCAGCagggcgucgucuCCGGGa -3'
miRNA:   3'- -CGUAGGG-G-CCGUG-GC-UGGUCG------------GGUUC- -5'
18415 3' -60 NC_004681.1 + 32102 0.71 0.298073
Target:  5'- ---aCCCgCGGCGCCGAUCAGCgagCCGAu -3'
miRNA:   3'- cguaGGG-GCCGUGGCUGGUCG---GGUUc -5'
18415 3' -60 NC_004681.1 + 24201 0.69 0.365888
Target:  5'- gGCGUCCgccaggCUGGCGCCGgaaccuuGCUGGCCCAc- -3'
miRNA:   3'- -CGUAGG------GGCCGUGGC-------UGGUCGGGUuc -5'
18415 3' -60 NC_004681.1 + 45954 0.69 0.383366
Target:  5'- -gGUCCCCGGCGCaaauGAUgGGCUCGu- -3'
miRNA:   3'- cgUAGGGGCCGUGg---CUGgUCGGGUuc -5'
18415 3' -60 NC_004681.1 + 22906 0.68 0.418154
Target:  5'- gGUcgCCCCGGCgauGCCGuaguAgCGGCCCAc- -3'
miRNA:   3'- -CGuaGGGGCCG---UGGC----UgGUCGGGUuc -5'
18415 3' -60 NC_004681.1 + 20091 0.68 0.418154
Target:  5'- -aGUgCCCGG-ACUGACCGGCCUGGa -3'
miRNA:   3'- cgUAgGGGCCgUGGCUGGUCGGGUUc -5'
18415 3' -60 NC_004681.1 + 30623 0.68 0.426242
Target:  5'- gGCGUCCCggcUGGUACCGGCCGuGgaucaucUCCAGGa -3'
miRNA:   3'- -CGUAGGG---GCCGUGGCUGGU-C-------GGGUUC- -5'
18415 3' -60 NC_004681.1 + 7307 0.68 0.427147
Target:  5'- cCGUUaCCGGCACCGGCC-GCCUucucGAGu -3'
miRNA:   3'- cGUAGgGGCCGUGGCUGGuCGGG----UUC- -5'
18415 3' -60 NC_004681.1 + 50678 0.68 0.44547
Target:  5'- aGCAgagcuaCCCCGGCGuuGgguuucGCCAGCCaCAGc -3'
miRNA:   3'- -CGUa-----GGGGCCGUggC------UGGUCGG-GUUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.