Results 1 - 20 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18415 | 3' | -60 | NC_004681.1 | + | 32102 | 0.71 | 0.298073 |
Target: 5'- ---aCCCgCGGCGCCGAUCAGCgagCCGAu -3' miRNA: 3'- cguaGGG-GCCGUGGCUGGUCG---GGUUc -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 25596 | 0.67 | 0.502915 |
Target: 5'- gGCGUCCCCGcugAgCGACCAaCCCAGu -3' miRNA: 3'- -CGUAGGGGCcg-UgGCUGGUcGGGUUc -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 17404 | 0.68 | 0.464225 |
Target: 5'- aGCGUCCCgCgGGCACgCGcGCCAGCagggcgucgucuCCGGGa -3' miRNA: 3'- -CGUAGGG-G-CCGUG-GC-UGGUCG------------GGUUC- -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 50678 | 0.68 | 0.44547 |
Target: 5'- aGCAgagcuaCCCCGGCGuuGgguuucGCCAGCCaCAGc -3' miRNA: 3'- -CGUa-----GGGGCCGUggC------UGGUCGG-GUUc -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 30623 | 0.68 | 0.426242 |
Target: 5'- gGCGUCCCggcUGGUACCGGCCGuGgaucaucUCCAGGa -3' miRNA: 3'- -CGUAGGG---GCCGUGGCUGGU-C-------GGGUUC- -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 20091 | 0.68 | 0.418154 |
Target: 5'- -aGUgCCCGG-ACUGACCGGCCUGGa -3' miRNA: 3'- cgUAgGGGCCgUGGCUGGUCGGGUUc -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 14906 | 0.66 | 0.553122 |
Target: 5'- ---cCCUCGGUACgGGCCAGCUgGGc -3' miRNA: 3'- cguaGGGGCCGUGgCUGGUCGGgUUc -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 12341 | 0.66 | 0.553122 |
Target: 5'- aGCA--CCgGGCcacCCGACuCAGCCCAGa -3' miRNA: 3'- -CGUagGGgCCGu--GGCUG-GUCGGGUUc -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 40223 | 0.67 | 0.522782 |
Target: 5'- -uGUCCCgGGCggucACCGACCuggcgaccCCCGGGg -3' miRNA: 3'- cgUAGGGgCCG----UGGCUGGuc------GGGUUC- -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 46700 | 0.67 | 0.502915 |
Target: 5'- -gGUCCUCGGCGagUgGGCCGGUCUggGc -3' miRNA: 3'- cgUAGGGGCCGU--GgCUGGUCGGGuuC- -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 7307 | 0.68 | 0.427147 |
Target: 5'- cCGUUaCCGGCACCGGCC-GCCUucucGAGu -3' miRNA: 3'- cGUAGgGGCCGUGGCUGGuCGGG----UUC- -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 24201 | 0.69 | 0.365888 |
Target: 5'- gGCGUCCgccaggCUGGCGCCGgaaccuuGCUGGCCCAc- -3' miRNA: 3'- -CGUAGG------GGCCGUGGC-------UGGUCGGGUuc -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 64353 | 0.66 | 0.532829 |
Target: 5'- --uUCCUCGGCGgUGugCGGUUCGGGg -3' miRNA: 3'- cguAGGGGCCGUgGCugGUCGGGUUC- -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 45954 | 0.69 | 0.383366 |
Target: 5'- -gGUCCCCGGCGCaaauGAUgGGCUCGu- -3' miRNA: 3'- cgUAGGGGCCGUGg---CUGgUCGGGUuc -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 14862 | 0.67 | 0.473756 |
Target: 5'- gGCGUCCgCGGCGuCaCGgaaACCGGCCUucGAGa -3' miRNA: 3'- -CGUAGGgGCCGU-G-GC---UGGUCGGG--UUC- -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 32865 | 0.66 | 0.542944 |
Target: 5'- aGCggCCCagCGGauuGCCGACCGGgCCGAa -3' miRNA: 3'- -CGuaGGG--GCCg--UGGCUGGUCgGGUUc -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 7598 | 0.66 | 0.583966 |
Target: 5'- cGCA-CCCaggcccaGGCAUCGACCGgagcGUCCGAa -3' miRNA: 3'- -CGUaGGGg------CCGUGGCUGGU----CGGGUUc -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 22906 | 0.68 | 0.418154 |
Target: 5'- gGUcgCCCCGGCgauGCCGuaguAgCGGCCCAc- -3' miRNA: 3'- -CGuaGGGGCCG---UGGC----UgGUCGGGUuc -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 6555 | 0.67 | 0.512809 |
Target: 5'- ---gUCCCGGCACCGAggcgggcggagaCUGGUCCAGa -3' miRNA: 3'- cguaGGGGCCGUGGCU------------GGUCGGGUUc -5' |
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18415 | 3' | -60 | NC_004681.1 | + | 75601 | 0.69 | 0.383366 |
Target: 5'- cCAUCUCgGGCACCGuaGCUAGUCCu-- -3' miRNA: 3'- cGUAGGGgCCGUGGC--UGGUCGGGuuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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