miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18415 3' -60 NC_004681.1 + 60051 0.67 0.512809
Target:  5'- cGCA--CCUGGCACCGGCUgaccguGGCCauCGAGg -3'
miRNA:   3'- -CGUagGGGCCGUGGCUGG------UCGG--GUUC- -5'
18415 3' -60 NC_004681.1 + 20091 0.67 0.512809
Target:  5'- aGCAauggaCCCGGCGCCGA---GCCCAc- -3'
miRNA:   3'- -CGUag---GGGCCGUGGCUgguCGGGUuc -5'
18415 3' -60 NC_004681.1 + 11976 0.66 0.532829
Target:  5'- -aGUCCCCuccgugGGCACCG-CUGGCUaCAAGg -3'
miRNA:   3'- cgUAGGGG------CCGUGGCuGGUCGG-GUUC- -5'
18415 3' -60 NC_004681.1 + 42326 0.66 0.582932
Target:  5'- cCAUCCCCGcccacgcGCAgCGcuccaaugccACCAGCCgCAAGu -3'
miRNA:   3'- cGUAGGGGC-------CGUgGC----------UGGUCGG-GUUC- -5'
18415 3' -60 NC_004681.1 + 12898 0.66 0.573639
Target:  5'- aCAcCCacaCCGGCuucguGCCGACCAGCCgCAc- -3'
miRNA:   3'- cGUaGG---GGCCG-----UGGCUGGUCGG-GUuc -5'
18415 3' -60 NC_004681.1 + 43375 0.67 0.483384
Target:  5'- aUAUCCCCGGCGC--GCaCAGUCCcuGAGa -3'
miRNA:   3'- cGUAGGGGCCGUGgcUG-GUCGGG--UUC- -5'
18415 3' -60 NC_004681.1 + 8654 0.67 0.483384
Target:  5'- --uUCCUcgCGGC-CCGucACCAGCCCGAa -3'
miRNA:   3'- cguAGGG--GCCGuGGC--UGGUCGGGUUc -5'
18415 3' -60 NC_004681.1 + 37140 0.72 0.264453
Target:  5'- cGC-UCCCCGGUGCUuggcauguaGAUCGGUCCAGGc -3'
miRNA:   3'- -CGuAGGGGCCGUGG---------CUGGUCGGGUUC- -5'
18415 3' -60 NC_004681.1 + 16793 0.72 0.270922
Target:  5'- gGCAUCCCCGGCAU------GCCCGAGg -3'
miRNA:   3'- -CGUAGGGGCCGUGgcugguCGGGUUC- -5'
18415 3' -60 NC_004681.1 + 12220 0.69 0.374974
Target:  5'- cGCAUCCCCGGUggcccguucuggGCUGAgUcggguGGCCCGGu -3'
miRNA:   3'- -CGUAGGGGCCG------------UGGCUgG-----UCGGGUUc -5'
18415 3' -60 NC_004681.1 + 51744 0.69 0.374974
Target:  5'- gGCcgCCCCGGCGCgGgcaagaguaacGCCGGUCUGAa -3'
miRNA:   3'- -CGuaGGGGCCGUGgC-----------UGGUCGGGUUc -5'
18415 3' -60 NC_004681.1 + 19828 0.69 0.380835
Target:  5'- cGCGgugaCCCCGGCuuCGAggugcuguccuacaCCgAGCCCAAGa -3'
miRNA:   3'- -CGUa---GGGGCCGugGCU--------------GG-UCGGGUUC- -5'
18415 3' -60 NC_004681.1 + 2858 0.69 0.382521
Target:  5'- cCGUCCCCgaGGCGCuCGACCgugacgaAGCCCc-- -3'
miRNA:   3'- cGUAGGGG--CCGUG-GCUGG-------UCGGGuuc -5'
18415 3' -60 NC_004681.1 + 75601 0.69 0.383366
Target:  5'- cCAUCUCgGGCACCGuaGCUAGUCCu-- -3'
miRNA:   3'- cGUAGGGgCCGUGGC--UGGUCGGGuuc -5'
18415 3' -60 NC_004681.1 + 51634 0.68 0.427147
Target:  5'- gGCGgaCCUGGCAa-GACCAGCCCu-- -3'
miRNA:   3'- -CGUagGGGCCGUggCUGGUCGGGuuc -5'
18415 3' -60 NC_004681.1 + 8578 0.68 0.436253
Target:  5'- ---cCCCCGGCauccuGCCGACCuuccuCCCGGGc -3'
miRNA:   3'- cguaGGGGCCG-----UGGCUGGuc---GGGUUC- -5'
18415 3' -60 NC_004681.1 + 16594 0.68 0.44547
Target:  5'- gGCGUCCCCGGU--CGACCuGCaacugCAGGc -3'
miRNA:   3'- -CGUAGGGGCCGugGCUGGuCGg----GUUC- -5'
18415 3' -60 NC_004681.1 + 19429 0.68 0.44547
Target:  5'- gGCGUCUgCGGCACCGA-UGGCaCCGu- -3'
miRNA:   3'- -CGUAGGgGCCGUGGCUgGUCG-GGUuc -5'
18415 3' -60 NC_004681.1 + 30468 0.68 0.44547
Target:  5'- aCGUCCaCCagGGCACCGACU-GCUCAGa -3'
miRNA:   3'- cGUAGG-GG--CCGUGGCUGGuCGGGUUc -5'
18415 3' -60 NC_004681.1 + 7151 0.67 0.473756
Target:  5'- uGCAgUCCaaGGCGCuCGAcacCCGcGCCCAGGa -3'
miRNA:   3'- -CGU-AGGggCCGUG-GCU---GGU-CGGGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.