miRNA display CGI


Results 41 - 60 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18415 3' -60 NC_004681.1 + 37140 0.72 0.264453
Target:  5'- cGC-UCCCCGGUGCUuggcauguaGAUCGGUCCAGGc -3'
miRNA:   3'- -CGuAGGGGCCGUGG---------CUGGUCGGGUUC- -5'
18415 3' -60 NC_004681.1 + 6405 0.72 0.251891
Target:  5'- ---gCCCCGGCGCCGAagcgaCCGGCCa--- -3'
miRNA:   3'- cguaGGGGCCGUGGCU-----GGUCGGguuc -5'
18415 3' -60 NC_004681.1 + 9092 0.73 0.211765
Target:  5'- cGCGUCgucaCCGGCGCCG-CUGGCUCGGGc -3'
miRNA:   3'- -CGUAGg---GGCCGUGGCuGGUCGGGUUC- -5'
18415 3' -60 NC_004681.1 + 21269 0.77 0.119722
Target:  5'- gGC-UCCCUGGCgACCc-CCAGCCCAAGg -3'
miRNA:   3'- -CGuAGGGGCCG-UGGcuGGUCGGGUUC- -5'
18415 3' -60 NC_004681.1 + 18099 0.82 0.051566
Target:  5'- gGCAUCCCCGGCAucggcgcccCCGGCCAGgCaCCGGGu -3'
miRNA:   3'- -CGUAGGGGCCGU---------GGCUGGUC-G-GGUUC- -5'
18415 3' -60 NC_004681.1 + 39895 0.69 0.383366
Target:  5'- gGCGgagacCCCCaGCGCgCGGCCAGCUgcgCAAGg -3'
miRNA:   3'- -CGUa----GGGGcCGUG-GCUGGUCGG---GUUC- -5'
18415 3' -60 NC_004681.1 + 66939 0.69 0.409278
Target:  5'- gGCggCCCUGGUGCCGcgcGCCgAGCUCGAa -3'
miRNA:   3'- -CGuaGGGGCCGUGGC---UGG-UCGGGUUc -5'
18415 3' -60 NC_004681.1 + 20091 0.67 0.512809
Target:  5'- aGCAauggaCCCGGCGCCGA---GCCCAc- -3'
miRNA:   3'- -CGUag---GGGCCGUGGCUgguCGGGUuc -5'
18415 3' -60 NC_004681.1 + 60051 0.67 0.512809
Target:  5'- cGCA--CCUGGCACCGGCUgaccguGGCCauCGAGg -3'
miRNA:   3'- -CGUagGGGCCGUGGCUGG------UCGG--GUUC- -5'
18415 3' -60 NC_004681.1 + 46844 0.67 0.502915
Target:  5'- gGCAaccgCCCCGGCACCccgauGAUCAaccgccuuGUCCGGGu -3'
miRNA:   3'- -CGUa---GGGGCCGUGG-----CUGGU--------CGGGUUC- -5'
18415 3' -60 NC_004681.1 + 43375 0.67 0.483384
Target:  5'- aUAUCCCCGGCGC--GCaCAGUCCcuGAGa -3'
miRNA:   3'- cGUAGGGGCCGUGgcUG-GUCGGG--UUC- -5'
18415 3' -60 NC_004681.1 + 8654 0.67 0.483384
Target:  5'- --uUCCUcgCGGC-CCGucACCAGCCCGAa -3'
miRNA:   3'- cguAGGG--GCCGuGGC--UGGUCGGGUUc -5'
18415 3' -60 NC_004681.1 + 7151 0.67 0.473756
Target:  5'- uGCAgUCCaaGGCGCuCGAcacCCGcGCCCAGGa -3'
miRNA:   3'- -CGU-AGGggCCGUG-GCU---GGU-CGGGUUC- -5'
18415 3' -60 NC_004681.1 + 30468 0.68 0.44547
Target:  5'- aCGUCCaCCagGGCACCGACU-GCUCAGa -3'
miRNA:   3'- cGUAGG-GG--CCGUGGCUGGuCGGGUUc -5'
18415 3' -60 NC_004681.1 + 19429 0.68 0.44547
Target:  5'- gGCGUCUgCGGCACCGA-UGGCaCCGu- -3'
miRNA:   3'- -CGUAGGgGCCGUGGCUgGUCG-GGUuc -5'
18415 3' -60 NC_004681.1 + 16594 0.68 0.44547
Target:  5'- gGCGUCCCCGGU--CGACCuGCaacugCAGGc -3'
miRNA:   3'- -CGUAGGGGCCGugGCUGGuCGg----GUUC- -5'
18415 3' -60 NC_004681.1 + 8578 0.68 0.436253
Target:  5'- ---cCCCCGGCauccuGCCGACCuuccuCCCGGGc -3'
miRNA:   3'- cguaGGGGCCG-----UGGCUGGuc---GGGUUC- -5'
18415 3' -60 NC_004681.1 + 51634 0.68 0.427147
Target:  5'- gGCGgaCCUGGCAa-GACCAGCCCu-- -3'
miRNA:   3'- -CGUagGGGCCGUggCUGGUCGGGuuc -5'
18415 3' -60 NC_004681.1 + 15560 0.68 0.427147
Target:  5'- -gAUCaCCGGCACCGACCAGggcaugaCCGu- -3'
miRNA:   3'- cgUAGgGGCCGUGGCUGGUCg------GGUuc -5'
18415 3' -60 NC_004681.1 + 16307 0.68 0.417261
Target:  5'- gGCAUCCCCgcGGCcggaucgacggaaGCCGAgCAGgCCAu- -3'
miRNA:   3'- -CGUAGGGG--CCG-------------UGGCUgGUCgGGUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.