miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18416 3' -54.3 NC_004681.1 + 62268 0.67 0.800211
Target:  5'- gCGCCGGGGGCaagaucaCCGCCgaggaguucgACGCGGGa -3'
miRNA:   3'- aGUGGUUCUCGa------GGUGGa---------UGUGCCUg -5'
18416 3' -54.3 NC_004681.1 + 30870 0.67 0.799256
Target:  5'- cCGCCGacccgcuGGAGCcccgcgaCACCcugUACGCGGACg -3'
miRNA:   3'- aGUGGU-------UCUCGag-----GUGG---AUGUGCCUG- -5'
18416 3' -54.3 NC_004681.1 + 25752 0.67 0.790588
Target:  5'- cCACCAcGGGCgugCCGCUgACccCGGACa -3'
miRNA:   3'- aGUGGUuCUCGa--GGUGGaUGu-GCCUG- -5'
18416 3' -54.3 NC_004681.1 + 39560 0.67 0.790588
Target:  5'- aCAUCAAGAGCgCgGCCgaggagcucGCAuCGGACg -3'
miRNA:   3'- aGUGGUUCUCGaGgUGGa--------UGU-GCCUG- -5'
18416 3' -54.3 NC_004681.1 + 49957 0.67 0.790588
Target:  5'- uUCugCGGG-GUUCUGCCagGgGCGGACg -3'
miRNA:   3'- -AGugGUUCuCGAGGUGGa-UgUGCCUG- -5'
18416 3' -54.3 NC_004681.1 + 32382 0.67 0.790588
Target:  5'- gUCGCCGuuGAGCUCCACCccCA-GGuCg -3'
miRNA:   3'- -AGUGGUu-CUCGAGGUGGauGUgCCuG- -5'
18416 3' -54.3 NC_004681.1 + 5461 0.67 0.780803
Target:  5'- uUCGCCuucuGGGAGUgggUCGCCUcgACGCuGGACa -3'
miRNA:   3'- -AGUGG----UUCUCGa--GGUGGA--UGUG-CCUG- -5'
18416 3' -54.3 NC_004681.1 + 18044 0.67 0.780803
Target:  5'- cCACC-GGAGCcgCCcucggcacucACCUGCGgGGACc -3'
miRNA:   3'- aGUGGuUCUCGa-GG----------UGGAUGUgCCUG- -5'
18416 3' -54.3 NC_004681.1 + 7310 0.67 0.770866
Target:  5'- aCGCCAGcGAcGUUCCACCcccgGCACccgGGGCu -3'
miRNA:   3'- aGUGGUU-CU-CGAGGUGGa---UGUG---CCUG- -5'
18416 3' -54.3 NC_004681.1 + 24864 0.67 0.770866
Target:  5'- cCGCCAAG-GCUCCcucACCaGCAauGGCg -3'
miRNA:   3'- aGUGGUUCuCGAGG---UGGaUGUgcCUG- -5'
18416 3' -54.3 NC_004681.1 + 15691 0.67 0.760789
Target:  5'- aCGCCucGGAGgUCauggaCACCUAC-CGGGCg -3'
miRNA:   3'- aGUGGu-UCUCgAG-----GUGGAUGuGCCUG- -5'
18416 3' -54.3 NC_004681.1 + 8368 0.67 0.750583
Target:  5'- cCACCGAG-GCUCUucagcaucuCCUGCGCGcGCu -3'
miRNA:   3'- aGUGGUUCuCGAGGu--------GGAUGUGCcUG- -5'
18416 3' -54.3 NC_004681.1 + 44774 0.67 0.750583
Target:  5'- gUCGCCGuugccgucgaggAGGGUgUCCuugGCCUGCACGGuGCa -3'
miRNA:   3'- -AGUGGU------------UCUCG-AGG---UGGAUGUGCC-UG- -5'
18416 3' -54.3 NC_004681.1 + 27466 0.67 0.750583
Target:  5'- aUCACCGGG-GUUCCGCCgUugAgGGuCa -3'
miRNA:   3'- -AGUGGUUCuCGAGGUGG-AugUgCCuG- -5'
18416 3' -54.3 NC_004681.1 + 59370 0.68 0.740259
Target:  5'- aUCaACCGuagaGGAGUUCCAgCUUGC-CGGACc -3'
miRNA:   3'- -AG-UGGU----UCUCGAGGU-GGAUGuGCCUG- -5'
18416 3' -54.3 NC_004681.1 + 69057 0.68 0.734012
Target:  5'- aCACCGAuGGCUgCGCCUuucaguggugcguacACGCGGGg -3'
miRNA:   3'- aGUGGUUcUCGAgGUGGA---------------UGUGCCUg -5'
18416 3' -54.3 NC_004681.1 + 61647 0.68 0.729827
Target:  5'- aUCGCCAAGcuGCgcgcagaagCCGCCgcCGCGGAg -3'
miRNA:   3'- -AGUGGUUCu-CGa--------GGUGGauGUGCCUg -5'
18416 3' -54.3 NC_004681.1 + 49791 0.68 0.729827
Target:  5'- gCACCAAGGGCUgCCACg-GC-UGGAUc -3'
miRNA:   3'- aGUGGUUCUCGA-GGUGgaUGuGCCUG- -5'
18416 3' -54.3 NC_004681.1 + 10796 0.68 0.719299
Target:  5'- aCACCGuggaagauGAGCUugucucCCGCCuUGCACGcGACg -3'
miRNA:   3'- aGUGGUu-------CUCGA------GGUGG-AUGUGC-CUG- -5'
18416 3' -54.3 NC_004681.1 + 16604 0.68 0.708687
Target:  5'- cCGCCAucugGGAGUUCCaguuGCCgggGCGCGG-Cg -3'
miRNA:   3'- aGUGGU----UCUCGAGG----UGGa--UGUGCCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.