Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18417 | 3' | -60.2 | NC_004681.1 | + | 14808 | 0.67 | 0.439726 |
Target: 5'- -cGCCCAGCUGGcccguaccGagGGCgugGGCCUGGa -3' miRNA: 3'- guCGGGUCGACC--------UagUCG---CCGGACUg -5' |
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18417 | 3' | -60.2 | NC_004681.1 | + | 60488 | 0.67 | 0.449141 |
Target: 5'- -uGCgCAGCgGGAUUAGUGGCggcaaUGGCg -3' miRNA: 3'- guCGgGUCGaCCUAGUCGCCGg----ACUG- -5' |
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18417 | 3' | -60.2 | NC_004681.1 | + | 7558 | 0.67 | 0.458666 |
Target: 5'- gGGCCUGGCUGaGUCGGuCGGUCaGAUc -3' miRNA: 3'- gUCGGGUCGACcUAGUC-GCCGGaCUG- -5' |
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18417 | 3' | -60.2 | NC_004681.1 | + | 60015 | 0.66 | 0.467331 |
Target: 5'- aAGCCCGG-UGGGcaccugcucgccuUCGGCGGCUcccgcaccUGGCa -3' miRNA: 3'- gUCGGGUCgACCU-------------AGUCGCCGG--------ACUG- -5' |
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18417 | 3' | -60.2 | NC_004681.1 | + | 3047 | 0.66 | 0.487867 |
Target: 5'- gGGUCCucGCUGGugaacUCGGCGcGCgUGGCg -3' miRNA: 3'- gUCGGGu-CGACCu----AGUCGC-CGgACUG- -5' |
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18417 | 3' | -60.2 | NC_004681.1 | + | 38909 | 0.66 | 0.487867 |
Target: 5'- aGGCCCGGaUGGucUCGGCGGaCUUGcGCg -3' miRNA: 3'- gUCGGGUCgACCu-AGUCGCC-GGAC-UG- -5' |
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18417 | 3' | -60.2 | NC_004681.1 | + | 65077 | 0.66 | 0.517914 |
Target: 5'- -cGCUCGGgUGGucgccgaGGuCGGCCUGGCa -3' miRNA: 3'- guCGGGUCgACCuag----UC-GCCGGACUG- -5' |
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18417 | 3' | -60.2 | NC_004681.1 | + | 16112 | 0.66 | 0.517914 |
Target: 5'- aCAGCCgccaCGGCUGuGUCGgguaucggcuucGCGGCgCUGGCg -3' miRNA: 3'- -GUCGG----GUCGACcUAGU------------CGCCG-GACUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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