Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18417 | 3' | -60.2 | NC_004681.1 | + | 58753 | 0.67 | 0.421239 |
Target: 5'- uGGCCC-GC-GGcgCAgGCGGCCgUGGCg -3' miRNA: 3'- gUCGGGuCGaCCuaGU-CGCCGG-ACUG- -5' |
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18417 | 3' | -60.2 | NC_004681.1 | + | 9872 | 0.73 | 0.188894 |
Target: 5'- uCAGCCCGGUuggcguaggcggagUGGAccgcggggaugaUCAGCGGCUUGGg -3' miRNA: 3'- -GUCGGGUCG--------------ACCU------------AGUCGCCGGACUg -5' |
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18417 | 3' | -60.2 | NC_004681.1 | + | 36887 | 0.72 | 0.20567 |
Target: 5'- -uGCCUAGUcagcgGGGggcgggcCAGCGGCCUGGCa -3' miRNA: 3'- guCGGGUCGa----CCUa------GUCGCCGGACUG- -5' |
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18417 | 3' | -60.2 | NC_004681.1 | + | 30964 | 0.71 | 0.264504 |
Target: 5'- gGGCuCCAGC-GGGUCGGCGGgC-GGCg -3' miRNA: 3'- gUCG-GGUCGaCCUAGUCGCCgGaCUG- -5' |
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18417 | 3' | -60.2 | NC_004681.1 | + | 9646 | 0.7 | 0.291614 |
Target: 5'- --cUUCAGCUGGAUCAGCuggaaGGCCgaggGGCg -3' miRNA: 3'- gucGGGUCGACCUAGUCG-----CCGGa---CUG- -5' |
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18417 | 3' | -60.2 | NC_004681.1 | + | 51590 | 0.7 | 0.305964 |
Target: 5'- gUAGCCgAGCUGGcggCAGCGGUCg--- -3' miRNA: 3'- -GUCGGgUCGACCua-GUCGCCGGacug -5' |
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18417 | 3' | -60.2 | NC_004681.1 | + | 3877 | 0.69 | 0.327723 |
Target: 5'- gAGCCCAGUgcaGAcuucgcgUCAGCGGCgaUGACg -3' miRNA: 3'- gUCGGGUCGac-CU-------AGUCGCCGg-ACUG- -5' |
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18417 | 3' | -60.2 | NC_004681.1 | + | 32240 | 0.67 | 0.411273 |
Target: 5'- gCGGUCCAGCUGGucGUUGGCgugGGCCgccgcggUGACc -3' miRNA: 3'- -GUCGGGUCGACC--UAGUCG---CCGG-------ACUG- -5' |
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18417 | 3' | -60.2 | NC_004681.1 | + | 14898 | 0.67 | 0.412173 |
Target: 5'- aCGGgCCAGCUGGGcgccagccuUCAGgaUGGCCagGGCg -3' miRNA: 3'- -GUCgGGUCGACCU---------AGUC--GCCGGa-CUG- -5' |
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18417 | 3' | -60.2 | NC_004681.1 | + | 8566 | 0.74 | 0.158508 |
Target: 5'- gCAGCCguGCcgGGGUCAGCcGCCUuGGCg -3' miRNA: 3'- -GUCGGguCGa-CCUAGUCGcCGGA-CUG- -5' |
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18417 | 3' | -60.2 | NC_004681.1 | + | 9464 | 0.76 | 0.114941 |
Target: 5'- -uGCCCAGCgGGAUCAGCGGgguggUGACa -3' miRNA: 3'- guCGGGUCGaCCUAGUCGCCgg---ACUG- -5' |
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18417 | 3' | -60.2 | NC_004681.1 | + | 38909 | 0.66 | 0.487867 |
Target: 5'- aGGCCCGGaUGGucUCGGCGGaCUUGcGCg -3' miRNA: 3'- gUCGGGUCgACCu-AGUCGCC-GGAC-UG- -5' |
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18417 | 3' | -60.2 | NC_004681.1 | + | 64766 | 0.67 | 0.430424 |
Target: 5'- aGGCCCAGCUuggcgGGAUCGucCGGUaUGGCg -3' miRNA: 3'- gUCGGGUCGA-----CCUAGUc-GCCGgACUG- -5' |
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18417 | 3' | -60.2 | NC_004681.1 | + | 40143 | 0.67 | 0.430424 |
Target: 5'- uCGGCCU-GCgGGAUCGGCuucGCcCUGACg -3' miRNA: 3'- -GUCGGGuCGaCCUAGUCGc--CG-GACUG- -5' |
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18417 | 3' | -60.2 | NC_004681.1 | + | 3047 | 0.66 | 0.487867 |
Target: 5'- gGGUCCucGCUGGugaacUCGGCGcGCgUGGCg -3' miRNA: 3'- gUCGGGu-CGACCu----AGUCGC-CGgACUG- -5' |
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18417 | 3' | -60.2 | NC_004681.1 | + | 13361 | 0.67 | 0.430424 |
Target: 5'- uGGCCUGGacgcGGAauUCGGCGaGCUUGACg -3' miRNA: 3'- gUCGGGUCga--CCU--AGUCGC-CGGACUG- -5' |
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18417 | 3' | -60.2 | NC_004681.1 | + | 7558 | 0.67 | 0.458666 |
Target: 5'- gGGCCUGGCUGaGUCGGuCGGUCaGAUc -3' miRNA: 3'- gUCGGGUCGACcUAGUC-GCCGGaCUG- -5' |
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18417 | 3' | -60.2 | NC_004681.1 | + | 39131 | 0.67 | 0.421239 |
Target: 5'- uGGUCCAGCuUGGGUgggcgcaccacCAGCaGGCCgucGACg -3' miRNA: 3'- gUCGGGUCG-ACCUA-----------GUCG-CCGGa--CUG- -5' |
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18417 | 3' | -60.2 | NC_004681.1 | + | 14808 | 0.67 | 0.439726 |
Target: 5'- -cGCCCAGCUGGcccguaccGagGGCgugGGCCUGGa -3' miRNA: 3'- guCGGGUCGACC--------UagUCG---CCGGACUg -5' |
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18417 | 3' | -60.2 | NC_004681.1 | + | 60488 | 0.67 | 0.449141 |
Target: 5'- -uGCgCAGCgGGAUUAGUGGCggcaaUGGCg -3' miRNA: 3'- guCGgGUCGaCCUAGUCGCCGg----ACUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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